JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
STK32B_chr4_5046480_5505989	0/0	a0004	414	1	0	0	1	0	0	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	0/0	a0005	414	1	0	1	0	0	0	copy fasta	STK32B	chr4	5046480	5505989
STK32C_chr10_132202492_132312950	0/0	a0000	0	1	0	0	1	0	0	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	1/1	a0001	486	348	93	63	131	16	43	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	a0002	486	8	2	1	4	0	1	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	a0003	486	8	1	0	1	0	6	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	a0004	486	1	1	0	0	0	0	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	a0005	486	1	0	0	1	0	0	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	a0006	486	1	1	0	0	0	0	copy fasta	STK32C	chr10	132202492	132312950
STK33_chr11_8386870_8599228	1/1	a0001	514	248	76	33	113	9	15	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	a0002	514	76	9	19	32	3	13	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	a0003	514	4	0	0	4	0	0	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	a0004	514	3	0	0	0	0	3	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	a0005	514	1	0	0	0	0	1	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	a0006	514	1	1	0	0	0	0	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	a0007	514	1	0	0	1	0	0	copy fasta	STK33	chr11	8386870	8599228
STK35_chr20_2096827_2153555	1/1	a0001	534	186	46	48	62	3	25	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	a0002	534	84	31	24	19	1	9	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	a0003	534	1	1	0	0	0	0	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	a0004	534	1	0	0	1	0	0	copy fasta	STK35	chr20	2096827	2153555
STK36_chr2_218667086_218707715	1/1	a0001	1315	107	6	29	56	5	9	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	a0002	1315	46	1	14	11	8	12	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	a0003	1315	27	4	1	18	0	4	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	a0004	1315	25	25	0	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	a0005	1315	19	19	0	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	a0006	1315	14	14	0	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	a0007	1315	9	8	1	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	a0008	1315	7	7	0	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	a0009	1315	5	0	5	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	a0010	1315	3	2	1	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	a0011	1315	3	3	0	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	a0012	1315	2	0	1	0	1	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	a0013	1315	2	0	0	2	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	a0014	1315	2	2	0	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	a0015	1315	2	0	0	2	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	a0016	1315	1	0	1	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	a0017	1315	1	0	0	0	0	1	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	a0018	1315	1	0	0	0	0	1	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	a0019	1315	1	0	0	1	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	a0020	1315	1	0	0	0	0	1	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	a0021	1315	1	0	1	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	a0022	1315	1	1	0	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK38L_chr12_27239286_27330959	1/1	a0001	464	374	86	64	178	8	36	copy fasta	STK38L	chr12	27239286	27330959
STK38_chr6_36488892_36552479	1/1	a0001	465	397	88	78	179	12	38	copy fasta	STK38	chr6	36488892	36552479
STK38_chr6_36488892_36552479	0/0	a0002	465	1	0	0	1	0	0	copy fasta	STK38	chr6	36488892	36552479
STK39_chr2_167949022_168252595	1/1	a0001	545	197	66	26	83	4	16	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	a0002	547	70	18	13	24	4	11	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	a0003	536	1	0	0	0	0	1	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	a0004	545	1	0	1	0	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	a0005	545	1	0	0	1	0	0	copy fasta	STK39	chr2	167949022	168252595