JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
STK3_chr8_98449633_98830688	1/1	a0001	491	169	50	28	64	8	17	copy fasta	STK3	chr8	98449633	98830688
STK3_chr8_98449633_98830688	0/0	a0002	491	1	0	0	0	0	1	copy fasta	STK3	chr8	98449633	98830688
STK40_chr1_36334628_36390924	1/1	a0001	435	282	69	57	107	13	34	copy fasta	STK40	chr1	36334628	36390924
STK40_chr1_36334628_36390924	0/0	a0002	435	67	19	15	20	5	8	copy fasta	STK40	chr1	36334628	36390924
STK40_chr1_36334628_36390924	0/0	a0003	435	1	0	0	1	0	0	copy fasta	STK40	chr1	36334628	36390924
STK4_chr20_44961512_45085021	1/0	a0001	487	275	77	35	130	5	27	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/1	a0002	487	47	12	13	1	9	11	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	a0003	487	4	0	0	4	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	a0004	487	1	0	0	1	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	a0005	487	1	1	0	0	0	0	copy fasta	STK4	chr20	44961512	45085021
STKLD1_chr9_133371366_133411096	0/0	a0001	680	197	45	31	99	4	18	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	1/1	a0002	680	115	22	33	31	10	17	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	a0003	680	8	0	2	4	0	2	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	a0004	680	7	0	2	0	2	3	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	a0005	680	6	6	0	0	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	a0006	680	5	5	0	0	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	a0007	680	5	5	0	0	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	a0008	680	3	3	0	0	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	a0009	680	2	1	1	0	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	a0010	680	1	1	0	0	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	a0011	680	1	1	0	0	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	a0012	680	1	0	0	1	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	a0013	680	1	0	0	1	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	a0014	680	1	0	0	1	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	a0015	680	1	0	0	1	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	a0016	680	1	0	1	0	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	a0017	680	1	1	0	0	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STMN1_chr1_25895116_25911419	1/1	a0001	149	382	92	66	176	12	34	copy fasta	STMN1	chr1	25895116	25911419
STMN2_chr8_79606117_79671158	1/1	a0001	179	401	86	74	176	16	47	copy fasta	STMN2	chr8	79606117	79671158
STMN2_chr8_79606117_79671158	0/0	a0002	179	1	0	0	0	0	1	copy fasta	STMN2	chr8	79606117	79671158
STMN3_chr20_63634712_63658424	1/1	a0001	180	387	91	78	156	18	42	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	a0002	180	1	1	0	0	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN4_chr8_27230308_27263404	1/1	a0001	216	434	94	80	198	18	42	copy fasta	STMN4	chr8	27230308	27263404
STMND1_chr6_17097050_17136378	1/1	a0001	276	421	87	78	191	17	46	copy fasta	STMND1	chr6	17097050	17136378
STMND1_chr6_17097050_17136378	0/0	a0002	276	4	4	0	0	0	0	copy fasta	STMND1	chr6	17097050	17136378
STMND1_chr6_17097050_17136378	0/0	a0003	276	2	1	0	1	0	0	copy fasta	STMND1	chr6	17097050	17136378
STMND1_chr6_17097050_17136378	0/0	a0004	276	1	0	0	0	1	0	copy fasta	STMND1	chr6	17097050	17136378
STMP1_chr7_135657514_135681416	1/1	a0001	47	391	89	72	168	14	46	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	0/0	a0002	47	1	1	0	0	0	0	copy fasta	STMP1	chr7	135657514	135681416
STN1_chr10_103872569_103923184	0/1	a0001	368	331	55	52	169	13	41	copy fasta	STN1	chr10	103872569	103923184
STN1_chr10_103872569_103923184	1/0	a0002	368	44	30	11	0	1	1	copy fasta	STN1	chr10	103872569	103923184
STN1_chr10_103872569_103923184	0/0	a0003	368	3	0	0	3	0	0	copy fasta	STN1	chr10	103872569	103923184
STN1_chr10_103872569_103923184	0/0	a0004	368	2	2	0	0	0	0	copy fasta	STN1	chr10	103872569	103923184
STN1_chr10_103872569_103923184	0/0	a0005	368	1	1	0	0	0	0	copy fasta	STN1	chr10	103872569	103923184
STN1_chr10_103872569_103923184	0/0	a0006	368	1	0	1	0	0	0	copy fasta	STN1	chr10	103872569	103923184
STOML1_chr15_73973926_73997295	1/1	a0001	398	421	94	79	188	14	44	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	a0002	398	1	1	0	0	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	a0003	398	1	1	0	0	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	a0004	398	1	0	1	0	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML2_chr9_35094778_35108131	1/1	a0001	356	428	94	68	206	14	44	copy fasta	STOML2	chr9	35094778	35108131