Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ABTB3_chr12_107313434_107664642	0/0	a0010	1104	1	0	0	1	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	a0011	1104	1	0	0	1	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	a0012	1104	1	1	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	a0013	1104	1	1	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	a0014	1104	1	1	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	a0015	1104	1	1	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	a0016	1104	1	0	1	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	a0017	1104	1	1	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	a0018	1104	1	1	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ACAA1_chr3_38117715_38142127	1/0	a0001	424	269	75	53	103	8	29	copy fasta	ACAA1	chr3	38117715	38142127
ACAA1_chr3_38117715_38142127	0/1	a0002	424	75	1	12	50	3	8	copy fasta	ACAA1	chr3	38117715	38142127
ACAA1_chr3_38117715_38142127	0/0	a0003	424	13	8	3	0	0	2	copy fasta	ACAA1	chr3	38117715	38142127
ACAA1_chr3_38117715_38142127	0/0	a0004	424	6	0	0	6	0	0	copy fasta	ACAA1	chr3	38117715	38142127
ACAA1_chr3_38117715_38142127	0/0	a0005	424	4	0	3	0	1	0	copy fasta	ACAA1	chr3	38117715	38142127
ACAA1_chr3_38117715_38142127	0/0	a0006	424	1	0	0	0	0	1	copy fasta	ACAA1	chr3	38117715	38142127
ACAA1_chr3_38117715_38142127	0/0	a0007	424	1	0	1	0	0	0	copy fasta	ACAA1	chr3	38117715	38142127
ACAA1_chr3_38117715_38142127	0/0	a0008	424	1	0	0	1	0	0	copy fasta	ACAA1	chr3	38117715	38142127
ACAA1_chr3_38117715_38142127	0/0	a0009	424	1	1	0	0	0	0	copy fasta	ACAA1	chr3	38117715	38142127
ACAA1_chr3_38117715_38142127	0/0	a0010	424	1	1	0	0	0	0	copy fasta	ACAA1	chr3	38117715	38142127
ACAA2_chr18_49777164_49818533	1/1	a0001	397	399	90	75	173	18	41	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	a0002	397	29	1	3	23	0	2	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	a0003	397	3	0	0	0	0	3	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	a0004	397	1	1	0	0	0	0	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	a0005	397	1	0	0	1	0	0	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	a0006	397	1	0	0	1	0	0	copy fasta	ACAA2	chr18	49777164	49818533
ACACA_chr17_37079992_37411836	0/1	a0001	2383	295	83	56	110	12	33	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	a0002	2383	1	0	0	0	0	1	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	a0003	2383	1	1	0	0	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	a0004	2383	1	0	0	1	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	a0005	2383	1	0	0	1	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACB_chr12_109111587_109273226	0/0	a0001	2458	121	41	16	44	8	12	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	1/0	a0002	2458	55	14	5	24	0	11	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0003	2458	34	0	6	26	1	1	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0004	2458	12	0	2	9	0	1	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0005	2458	12	0	1	9	0	2	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0006	2458	11	6	1	3	1	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/1	a0007	2458	8	7	0	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0008	2458	7	6	0	1	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0009	2458	6	2	4	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0010	2458	4	0	1	1	0	2	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0011	2458	3	0	2	1	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0012	2458	2	0	0	0	0	2	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0013	2458	2	0	2	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0014	2458	2	1	1	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0015	2458	2	2	0	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0016	2458	2	0	0	2	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0017	2458	1	1	0	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0018	2458	1	1	0	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0019	2458	1	0	0	1	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0020	2458	1	0	0	0	0	1	copy fasta	ACACB	chr12	109111587	109273226