JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BBOF1_chr14_74014349_74071092	0/0	a0012	529	1	0	0	0	0	1	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	a0013	529	1	0	0	0	0	1	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	a0014	529	1	0	0	1	0	0	copy fasta	BBOF1	chr14	74014349	74071092
BBOX1_chr11_27035815_27132809	1/1	a0001	387	317	86	60	116	14	39	copy fasta	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	a0002	387	1	0	0	0	0	1	copy fasta	BBOX1	chr11	27035815	27132809
BBS10_chr12_76339474_76353415	1/1	a0001	723	405	84	73	192	14	40	copy fasta	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	a0002	723	7	0	3	0	0	4	copy fasta	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	a0003	723	1	1	0	0	0	0	copy fasta	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	a0004	723	1	1	0	0	0	0	copy fasta	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	a0005	723	1	1	0	0	0	0	copy fasta	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	a0006	723	1	1	0	0	0	0	copy fasta	BBS10	chr12	76339474	76353415
BBS12_chr4_122727704_122749939	0/0	a0001	710	152	31	26	79	3	13	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	1/1	a0002	710	132	19	28	59	6	18	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	a0003	710	23	8	7	0	3	5	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	a0004	710	18	14	4	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	a0005	710	12	10	2	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	a0006	710	5	5	0	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	a0007	710	5	0	0	5	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	a0008	710	4	4	0	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	a0009	710	2	2	0	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	a0010	710	2	2	0	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	a0011	710	1	0	0	1	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	a0012	710	1	1	0	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	a0013	710	1	0	0	1	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	a0014	710	1	0	1	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	a0015	710	1	1	0	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	a0016	574	1	0	0	1	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	a0017	321	1	1	0	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	a0018	710	1	0	1	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	a0019	710	1	0	1	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS1_chr11_66505635_66538598	1/1	a0001	593	362	75	55	173	14	43	copy fasta	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	a0002	593	9	8	1	0	0	0	copy fasta	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	a0003	593	9	8	1	0	0	0	copy fasta	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	a0004	593	2	0	0	2	0	0	copy fasta	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	a0005	593	1	1	0	0	0	0	copy fasta	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	a0006	548	1	0	1	0	0	0	copy fasta	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	a0007	593	1	0	0	0	0	1	copy fasta	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	a0008	593	1	0	0	1	0	0	copy fasta	BBS1	chr11	66505635	66538598
BBS2_chr16_56479385_56525024	0/0	a0001	721	245	55	43	104	16	27	copy fasta	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/1	a0002	721	133	18	21	81	0	12	copy fasta	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	a0003	721	11	11	0	0	0	0	copy fasta	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	a0004	721	7	0	0	4	0	3	copy fasta	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	a0005	721	1	0	0	1	0	0	copy fasta	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	1/0	a0006	721	1	0	0	0	0	0	copy fasta	BBS2	chr16	56479385	56525024
BBS4_chr15_72681207_72743473	1/0	a0001	519	272	69	43	134	8	17	copy fasta	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/1	a0002	519	115	16	24	49	8	17	copy fasta	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	a0003	519	3	3	0	0	0	0	copy fasta	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	a0004	519	2	0	0	2	0	0	copy fasta	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	a0005	519	1	0	0	0	0	1	copy fasta	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	a0006	519	1	0	0	1	0	0	copy fasta	BBS4	chr15	72681207	72743473