JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
STOML3_chr13_38960925_38995831	1/1	a0001	291	379	79	80	158	12	48	copy fasta	STOML3	chr13	38960925	38995831
STOML3_chr13_38960925_38995831	0/0	a0002	291	15	13	2	0	0	0	copy fasta	STOML3	chr13	38960925	38995831
STOML3_chr13_38960925_38995831	0/0	a0003	291	1	1	0	0	0	0	copy fasta	STOML3	chr13	38960925	38995831
STOML3_chr13_38960925_38995831	0/0	a0004	291	1	1	0	0	0	0	copy fasta	STOML3	chr13	38960925	38995831
STOM_chr9_121333987_121375250	1/1	a0001	288	379	90	72	165	18	32	copy fasta	STOM	chr9	121333987	121375250
STOM_chr9_121333987_121375250	0/0	a0002	288	4	0	2	0	0	2	copy fasta	STOM	chr9	121333987	121375250
STOM_chr9_121333987_121375250	0/0	a0003	288	3	0	0	3	0	0	copy fasta	STOM	chr9	121333987	121375250
STON1_chr2_48525154_48603513	1/0	a0001	735	203	54	37	81	7	23	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/1	a0002	735	125	23	27	58	3	13	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	a0003	735	19	4	7	0	4	4	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	a0004	735	7	2	2	2	0	1	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	a0005	735	5	5	0	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	a0006	735	2	2	0	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	a0007	735	2	0	2	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	a0008	735	1	0	0	1	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	a0009	735	1	1	0	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	a0010	735	1	0	0	1	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	a0011	735	1	0	0	1	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	a0012	735	1	1	0	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	a0013	735	1	1	0	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	a0014	735	1	0	0	0	1	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	a0015	735	1	0	0	1	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	a0016	735	1	1	0	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	a0017	735	1	0	0	1	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	a0018	735	1	0	0	0	0	1	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	a0019	735	1	0	0	0	1	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	a0020	735	1	0	1	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON2_chr14_81255652_81405324	0/1	a0001	955	73	11	19	30	2	10	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	a0002	955	73	36	14	17	2	4	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	1/0	a0003	955	63	5	13	35	2	7	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	a0004	955	13	2	3	6	0	2	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	a0005	955	11	6	2	2	0	1	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	a0006	955	8	6	2	0	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	a0007	955	7	7	0	0	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	a0008	955	5	5	0	0	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	a0009	955	5	0	1	1	0	3	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	a0010	955	1	1	0	0	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	a0011	955	1	0	0	1	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	a0012	955	1	0	0	1	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	a0013	955	1	0	0	1	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	a0014	955	1	0	0	0	0	1	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	a0015	955	1	1	0	0	0	0	copy fasta	STON2	chr14	81255652	81405324
STOX1_chr10_68822531_68898060	0/1	a0001	887	164	26	25	87	7	18	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	a0002	887	61	2	16	28	2	13	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	a0003	887	47	31	8	2	1	5	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	a0004	887	10	9	1	0	0	0	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	a0005	887	5	5	0	0	0	0	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	a0006	887	4	3	1	0	0	0	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	a0007	887	3	0	0	3	0	0	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	a0008	887	3	3	0	0	0	0	copy fasta	STOX1	chr10	68822531	68898060