JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
STOX1_chr10_68822531_68898060	0/0	a0009	887	3	0	0	0	0	3	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	a0010	887	3	3	0	0	0	0	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	a0011	887	3	2	1	0	0	0	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	a0012	989	1	0	0	1	0	0	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	1/0	a0013	989	1	0	0	0	0	0	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	a0014	887	1	0	1	0	0	0	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	a0015	887	1	0	0	1	0	0	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	a0016	887	1	0	1	0	0	0	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	a0017	887	1	0	0	0	0	1	copy fasta	STOX1	chr10	68822531	68898060
STOX2_chr4_183900307_184028526	1/1	a0001	926	297	78	53	112	14	38	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	a0002	926	12	10	2	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	a0003	926	4	1	3	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	a0004	926	2	0	0	0	0	2	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	a0005	926	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	a0006	926	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	a0007	926	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STPG1_chr1_24351999_24418782	0/1	a0001	334	121	17	19	61	8	15	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	1/0	a0002	334	107	36	13	39	4	14	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	a0003	334	81	10	19	42	2	8	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	a0004	334	22	8	10	0	1	3	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	a0005	334	19	19	0	0	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	a0006	334	4	1	2	0	0	1	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	a0007	334	1	1	0	0	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	a0008	334	1	0	0	0	0	1	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	a0009	334	1	0	1	0	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	a0010	334	1	0	0	0	1	0	copy fasta	STPG1	chr1	24351999	24418782
STPG2_chr4_97553872_98148476	1/0	a0001	459	152	33	35	67	4	12	copy fasta	STPG2	chr4	97553872	98148476
STPG2_chr4_97553872_98148476	0/1	a0002	459	66	16	7	30	2	10	copy fasta	STPG2	chr4	97553872	98148476
STPG2_chr4_97553872_98148476	0/0	a0003	459	20	12	5	0	2	1	copy fasta	STPG2	chr4	97553872	98148476
STPG2_chr4_97553872_98148476	0/0	a0004	459	19	10	4	4	0	1	copy fasta	STPG2	chr4	97553872	98148476
STPG2_chr4_97553872_98148476	0/0	a0005	459	2	2	0	0	0	0	copy fasta	STPG2	chr4	97553872	98148476
STPG2_chr4_97553872_98148476	0/0	a0006	459	2	2	0	0	0	0	copy fasta	STPG2	chr4	97553872	98148476
STPG2_chr4_97553872_98148476	0/0	a0007	459	1	0	1	0	0	0	copy fasta	STPG2	chr4	97553872	98148476
STPG2_chr4_97553872_98148476	0/0	a0008	459	1	1	0	0	0	0	copy fasta	STPG2	chr4	97553872	98148476
STPG2_chr4_97553872_98148476	0/0	a0009	459	1	0	0	1	0	0	copy fasta	STPG2	chr4	97553872	98148476
STPG2_chr4_97553872_98148476	0/0	a0010	459	1	1	0	0	0	0	copy fasta	STPG2	chr4	97553872	98148476
STPG2_chr4_97553872_98148476	0/0	a0011	459	1	1	0	0	0	0	copy fasta	STPG2	chr4	97553872	98148476
STPG3_chr9_137246286_137258483	1/1	a0001	308	314	88	61	116	13	34	copy fasta	STPG3	chr9	137246286	137258483
STPG3_chr9_137246286_137258483	0/0	a0002	308	81	1	15	53	3	9	copy fasta	STPG3	chr9	137246286	137258483
STPG3_chr9_137246286_137258483	0/0	a0003	308	4	4	0	0	0	0	copy fasta	STPG3	chr9	137246286	137258483
STPG3_chr9_137246286_137258483	0/0	a0004	308	1	1	0	0	0	0	copy fasta	STPG3	chr9	137246286	137258483
STPG3_chr9_137246286_137258483	0/0	a0005	308	1	0	0	0	0	1	copy fasta	STPG3	chr9	137246286	137258483
STPG3_chr9_137246286_137258483	0/0	a0006	308	1	1	0	0	0	0	copy fasta	STPG3	chr9	137246286	137258483
STPG3_chr9_137246286_137258483	0/0	a0007	308	1	1	0	0	0	0	copy fasta	STPG3	chr9	137246286	137258483
STPG3_chr9_137246286_137258483	0/0	a0008	308	1	0	0	1	0	0	copy fasta	STPG3	chr9	137246286	137258483
STPG4_chr2_47081991_47160308	1/1	a0001	248	235	54	35	109	10	25	copy fasta	STPG4	chr2	47081991	47160308
STPG4_chr2_47081991_47160308	0/0	a0002	248	51	20	13	7	2	9	copy fasta	STPG4	chr2	47081991	47160308
STPG4_chr2_47081991_47160308	0/0	a0003	248	46	11	6	23	1	5	copy fasta	STPG4	chr2	47081991	47160308
STPG4_chr2_47081991_47160308	0/0	a0004	36	10	0	5	5	0	0	copy fasta	STPG4	chr2	47081991	47160308
STPG4_chr2_47081991_47160308	0/0	a0005	248	2	0	2	0	0	0	copy fasta	STPG4	chr2	47081991	47160308