JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
STPG4_chr2_47081991_47160308	0/0	a0006	248	2	2	0	0	0	0	copy fasta	STPG4	chr2	47081991	47160308
STPG4_chr2_47081991_47160308	0/0	a0007	248	2	1	1	0	0	0	copy fasta	STPG4	chr2	47081991	47160308
STPG4_chr2_47081991_47160308	0/0	a0008	248	1	1	0	0	0	0	copy fasta	STPG4	chr2	47081991	47160308
STPG4_chr2_47081991_47160308	0/0	a0009	248	1	0	0	0	1	0	copy fasta	STPG4	chr2	47081991	47160308
STPG4_chr2_47081991_47160308	0/0	a0010	248	1	0	0	0	0	1	copy fasta	STPG4	chr2	47081991	47160308
STPG4_chr2_47081991_47160308	0/0	a0011	36	1	1	0	0	0	0	copy fasta	STPG4	chr2	47081991	47160308
STRA6_chr15_74174466_74207787	1/1	a0001	667	247	74	40	101	12	18	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	a0002	667	92	6	11	61	4	10	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	a0003	667	5	5	0	0	0	0	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	a0004	667	4	2	2	0	0	0	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	a0005	667	4	4	0	0	0	0	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	a0006	667	3	2	1	0	0	0	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	a0007	667	2	0	2	0	0	0	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	a0008	667	1	0	1	0	0	0	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	a0009	667	1	0	1	0	0	0	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	a0010	667	1	1	0	0	0	0	copy fasta	STRA6	chr15	74174466	74207787
STRA8_chr7_135228838_135263663	0/1	a0001	380	287	58	66	109	14	39	copy fasta	STRA8	chr7	135228838	135263663
STRA8_chr7_135228838_135263663	1/0	a0002	379	103	19	12	66	0	5	copy fasta	STRA8	chr7	135228838	135263663
STRA8_chr7_135228838_135263663	0/0	a0003	380	13	13	0	0	0	0	copy fasta	STRA8	chr7	135228838	135263663
STRA8_chr7_135228838_135263663	0/0	a0004	380	6	0	0	6	0	0	copy fasta	STRA8	chr7	135228838	135263663
STRA8_chr7_135228838_135263663	0/0	a0005	379	2	0	0	2	0	0	copy fasta	STRA8	chr7	135228838	135263663
STRA8_chr7_135228838_135263663	0/0	a0006	379	2	0	0	2	0	0	copy fasta	STRA8	chr7	135228838	135263663
STRA8_chr7_135228838_135263663	0/0	a0007	380	1	1	0	0	0	0	copy fasta	STRA8	chr7	135228838	135263663
STRA8_chr7_135228838_135263663	0/0	a0008	380	1	0	0	1	0	0	copy fasta	STRA8	chr7	135228838	135263663
STRA8_chr7_135228838_135263663	0/0	a0009	380	1	1	0	0	0	0	copy fasta	STRA8	chr7	135228838	135263663
STRADA_chr17_63697832_63746799	1/1	a0001	431	320	83	56	136	13	30	copy fasta	STRADA	chr17	63697832	63746799
STRADA_chr17_63697832_63746799	0/0	a0002	431	2	2	0	0	0	0	copy fasta	STRADA	chr17	63697832	63746799
STRADA_chr17_63697832_63746799	0/0	a0003	431	1	0	0	0	1	0	copy fasta	STRADA	chr17	63697832	63746799
STRADA_chr17_63697832_63746799	0/0	a0004	431	1	1	0	0	0	0	copy fasta	STRADA	chr17	63697832	63746799
STRADB_chr2_201446740_201485846	1/1	a0001	418	385	86	64	185	14	34	copy fasta	STRADB	chr2	201446740	201485846
STRADB_chr2_201446740_201485846	0/0	a0002	418	1	0	0	1	0	0	copy fasta	STRADB	chr2	201446740	201485846
STRAP_chr12_15877387_15908478	1/1	a0001	350	353	90	60	165	8	28	copy fasta	STRAP	chr12	15877387	15908478
STRAP_chr12_15877387_15908478	0/0	a0002	350	1	0	0	1	0	0	copy fasta	STRAP	chr12	15877387	15908478
STRAP_chr12_15877387_15908478	0/0	a0003	350	1	0	0	1	0	0	copy fasta	STRAP	chr12	15877387	15908478
STRAP_chr12_15877387_15908478	0/0	a0004	350	1	0	0	1	0	0	copy fasta	STRAP	chr12	15877387	15908478
STRBP_chr9_123116617_123273586	1/1	a0001	672	236	70	48	100	4	12	copy fasta	STRBP	chr9	123116617	123273586
STRC_chr15_43594563_43623800	1/1	a0001	1775	185	14	42	91	11	25	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	a0002	1775	111	43	13	45	1	9	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	a0003	1775	33	22	3	1	4	3	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	a0004	796	17	0	1	16	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	a0005	1775	6	0	5	0	0	1	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	a0006	1776	3	0	2	1	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	a0007	1775	3	1	1	0	0	1	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	a0008	1775	2	0	0	2	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	a0009	1776	1	1	0	0	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	a0010	1776	1	1	0	0	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	a0011	1775	1	0	0	0	0	1	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	a0012	1775	1	0	0	1	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	a0013	1775	1	0	0	1	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	a0014	1775	1	0	1	0	0	0	copy fasta	STRC	chr15	43594563	43623800