JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
STRC_chr15_43594563_43623800	0/0	a0015	1775	1	0	0	1	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	a0016	1775	1	1	0	0	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	a0017	1775	1	1	0	0	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	a0018	1775	1	1	0	0	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	a0019	1775	1	0	0	1	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	a0020	1775	1	0	0	1	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	a0021	1775	1	1	0	0	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	a0022	1771	1	0	0	1	0	0	copy fasta	STRC	chr15	43594563	43623800
STRIP1_chr1_110029624_110059641	1/1	a0001	837	401	93	71	178	16	41	copy fasta	STRIP1	chr1	110029624	110059641
STRIP1_chr1_110029624_110059641	0/0	a0002	837	2	0	0	2	0	0	copy fasta	STRIP1	chr1	110029624	110059641
STRIP1_chr1_110029624_110059641	0/0	a0003	837	1	0	0	0	0	1	copy fasta	STRIP1	chr1	110029624	110059641
STRIP1_chr1_110029624_110059641	0/0	a0004	837	1	0	1	0	0	0	copy fasta	STRIP1	chr1	110029624	110059641
STRIP1_chr1_110029624_110059641	0/0	a0005	837	1	1	0	0	0	0	copy fasta	STRIP1	chr1	110029624	110059641
STRIP2_chr7_129429432_129493399	1/1	a0001	834	298	89	59	100	10	38	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	a0002	834	36	1	3	32	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	a0003	834	2	0	1	0	1	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	a0004	834	2	0	2	0	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	a0005	834	2	2	0	0	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	a0006	834	1	0	0	1	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	a0007	834	1	0	0	1	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	a0008	834	1	1	0	0	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	a0009	834	1	0	1	0	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	a0010	834	1	1	0	0	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	a0011	834	1	0	0	0	1	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIT1_chr3_155285227_155298683	1/1	a0001	35	444	92	78	222	14	36	copy fasta	STRIT1	chr3	155285227	155298683
STRN3_chr14_30888804_31031379	1/0	a0001	797	171	46	32	68	4	20	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/1	a0002	797	128	30	21	60	3	13	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	a0003	797	54	3	5	39	0	7	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	a0004	797	3	2	1	0	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	a0005	797	3	0	0	3	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	a0006	797	1	1	0	0	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	a0007	797	1	0	0	0	1	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	a0008	797	1	0	1	0	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	a0009	797	1	0	0	1	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	a0010	797	1	0	0	1	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN4_chr19_46714511_46751450	1/1	a0001	753	367	74	73	161	14	43	copy fasta	STRN4	chr19	46714511	46751450
STRN4_chr19_46714511_46751450	0/0	a0002	753	31	20	5	5	0	1	copy fasta	STRN4	chr19	46714511	46751450
STRN4_chr19_46714511_46751450	0/0	a0003	753	1	0	1	0	0	0	copy fasta	STRN4	chr19	46714511	46751450
STRN4_chr19_46714511_46751450	0/0	a0004	753	1	0	0	1	0	0	copy fasta	STRN4	chr19	46714511	46751450
STRN4_chr19_46714511_46751450	0/0	a0005	753	1	0	0	1	0	0	copy fasta	STRN4	chr19	46714511	46751450
STRN4_chr19_46714511_46751450	0/0	a0006	753	1	0	1	0	0	0	copy fasta	STRN4	chr19	46714511	46751450
STRN_chr2_36832698_36971536	1/1	a0001	780	295	75	49	122	13	34	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	a0002	780	3	0	0	1	0	2	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	a0003	780	1	0	0	0	1	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	a0004	780	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	a0005	780	1	0	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	a0006	780	1	1	0	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STS_chrX_7142712_7359641	1/1	a0001	578	223	50	44	95	11	21	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	a0002	578	2	2	0	0	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	a0003	578	2	0	0	2	0	0	copy fasta	STS	chrX	7142712	7359641