JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
STS_chrX_7142712_7359641	0/0	a0004	578	1	0	1	0	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	a0005	578	1	0	1	0	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	a0006	578	1	0	0	0	0	1	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	a0007	578	1	0	0	1	0	0	copy fasta	STS	chrX	7142712	7359641
STT3A_chr11_125587852_125628091	1/1	a0001	705	359	89	64	160	14	30	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	a0002	705	1	1	0	0	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3B_chr3_31527925_31642616	1/1	a0001	826	339	90	52	163	12	20	copy fasta	STT3B	chr3	31527925	31642616
STT3B_chr3_31527925_31642616	0/0	a0002	826	2	0	0	2	0	0	copy fasta	STT3B	chr3	31527925	31642616
STT3B_chr3_31527925_31642616	0/0	a0003	826	1	0	0	1	0	0	copy fasta	STT3B	chr3	31527925	31642616
STUB1_chr16_675410_687801	1/1	a0001	303	354	94	60	142	12	44	copy fasta	STUB1	chr16	675410	687801
STUB1_chr16_675410_687801	0/0	a0002	303	2	0	0	0	0	2	copy fasta	STUB1	chr16	675410	687801
STUM_chr1_226543764_226614230	1/1	a0001	141	400	94	61	183	12	48	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	a0002	141	1	0	0	1	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	a0003	133	1	0	1	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STX10_chr19_13139058_13155375	1/1	a0001	249	326	94	68	104	14	44	copy fasta	STX10	chr19	13139058	13155375
STX10_chr19_13139058_13155375	0/0	a0002	249	1	1	0	0	0	0	copy fasta	STX10	chr19	13139058	13155375
STX10_chr19_13139058_13155375	0/0	a0003	249	1	1	0	0	0	0	copy fasta	STX10	chr19	13139058	13155375
STX11_chr6_144145517_144196939	1/1	a0001	287	349	78	55	178	10	26	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	a0002	287	15	13	2	0	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	a0003	287	12	2	0	10	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	a0004	287	1	1	0	0	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	a0005	287	1	0	1	0	0	0	copy fasta	STX11	chr6	144145517	144196939
STX12_chr1_27768219_27829443	1/1	a0001	276	227	84	26	91	6	18	copy fasta	STX12	chr1	27768219	27829443
STX12_chr1_27768219_27829443	0/0	a0002	276	1	0	0	1	0	0	copy fasta	STX12	chr1	27768219	27829443
STX16_chr20_58646283_58684526	1/1	a0001	325	375	83	71	160	14	45	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	a0002	325	4	4	0	0	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	a0003	325	1	0	1	0	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	a0004	325	1	0	0	1	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	a0005	325	1	1	0	0	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	a0006	325	1	0	0	1	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	a0007	325	1	0	0	0	0	1	copy fasta	STX16	chr20	58646283	58684526
STX17_chr9_99901654_99979534	1/1	a0001	302	287	71	70	113	7	24	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	a0002	302	5	0	4	0	1	0	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	a0003	302	1	1	0	0	0	0	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	a0004	302	1	0	0	1	0	0	copy fasta	STX17	chr9	99901654	99979534
STX18_chr4_4413968_4547048	1/1	a0001	335	223	77	51	60	14	19	copy fasta	STX18	chr4	4413968	4547048
STX18_chr4_4413968_4547048	0/0	a0002	335	9	9	0	0	0	0	copy fasta	STX18	chr4	4413968	4547048
STX18_chr4_4413968_4547048	0/0	a0003	335	5	4	1	0	0	0	copy fasta	STX18	chr4	4413968	4547048
STX18_chr4_4413968_4547048	0/0	a0004	335	5	2	2	0	0	1	copy fasta	STX18	chr4	4413968	4547048
STX18_chr4_4413968_4547048	0/0	a0005	335	2	2	0	0	0	0	copy fasta	STX18	chr4	4413968	4547048
STX18_chr4_4413968_4547048	0/0	a0006	335	1	1	0	0	0	0	copy fasta	STX18	chr4	4413968	4547048
STX18_chr4_4413968_4547048	0/0	a0007	335	1	1	0	0	0	0	copy fasta	STX18	chr4	4413968	4547048
STX19_chr3_94009365_94033597	1/1	a0001	294	392	92	76	162	14	46	copy fasta	STX19	chr3	94009365	94033597
STX1A_chr7_73694210_73724669	1/1	a0001	288	400	94	76	174	16	38	copy fasta	STX1A	chr7	73694210	73724669
STX1B_chr16_30984256_31015638	1/1	a0001	288	282	86	64	80	14	36	copy fasta	STX1B	chr16	30984256	31015638
STX2_chr12_130784600_130844250	0/0	a0001	288	224	20	45	116	10	33	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	1/1	a0002	288	120	54	26	22	3	13	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	a0003	288	28	15	1	10	0	2	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	a0004	288	3	3	0	0	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	a0005	288	1	1	0	0	0	0	copy fasta	STX2	chr12	130784600	130844250