JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
STX2_chr12_130784600_130844250	0/0	a0006	288	1	1	0	0	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	a0007	288	1	0	0	1	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	a0008	288	1	0	0	1	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	a0009	288	1	0	0	0	1	0	copy fasta	STX2	chr12	130784600	130844250
STX3_chr11_59750376_59810878	1/1	a0001	289	207	66	51	60	4	24	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	a0002	289	5	4	1	0	0	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	a0003	289	3	3	0	0	0	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	a0004	289	2	2	0	0	0	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	a0005	289	1	1	0	0	0	0	copy fasta	STX3	chr11	59750376	59810878
STX4_chr16_31028558_31045164	1/1	a0001	297	260	82	72	60	12	32	copy fasta	STX4	chr16	31028558	31045164
STX4_chr16_31028558_31045164	0/0	a0002	297	2	0	0	2	0	0	copy fasta	STX4	chr16	31028558	31045164
STX5_chr11_62801860_62837051	1/1	a0001	355	368	88	61	174	16	27	copy fasta	STX5	chr11	62801860	62837051
STX5_chr11_62801860_62837051	0/0	a0002	355	9	0	0	9	0	0	copy fasta	STX5	chr11	62801860	62837051
STX5_chr11_62801860_62837051	0/0	a0003	355	1	0	1	0	0	0	copy fasta	STX5	chr11	62801860	62837051
STX5_chr11_62801860_62837051	0/0	a0004	355	1	0	0	0	0	1	copy fasta	STX5	chr11	62801860	62837051
STX5_chr11_62801860_62837051	0/0	a0005	355	1	0	0	1	0	0	copy fasta	STX5	chr11	62801860	62837051
STX6_chr1_180967725_181027870	1/1	a0001	255	350	82	62	156	12	36	copy fasta	STX6	chr1	180967725	181027870
STX7_chr6_132440867_132518116	1/1	a0001	261	380	96	62	166	12	42	copy fasta	STX7	chr6	132440867	132518116
STX8_chr17_9245471_9580820	1/1	a0001	236	187	73	40	34	10	28	copy fasta	STX8	chr17	9245471	9580820
STX8_chr17_9245471_9580820	0/0	a0002	236	1	1	0	0	0	0	copy fasta	STX8	chr17	9245471	9580820
STXBP1_chr9_127607277_127697699	1/1	a0001	594	300	84	64	108	10	32	copy fasta	STXBP1	chr9	127607277	127697699
STXBP2_chr19_7632110_7652873	0/0	a0001	593	307	73	53	153	8	20	copy fasta	STXBP2	chr19	7632110	7652873
STXBP2_chr19_7632110_7652873	0/0	a0002	593	102	17	29	26	6	24	copy fasta	STXBP2	chr19	7632110	7652873
STXBP2_chr19_7632110_7652873	0/0	a0003	593	5	4	0	1	0	0	copy fasta	STXBP2	chr19	7632110	7652873
STXBP2_chr19_7632110_7652873	0/0	a0004	593	4	4	0	0	0	0	copy fasta	STXBP2	chr19	7632110	7652873
STXBP2_chr19_7632110_7652873	0/0	a0005	593	2	1	1	0	0	0	copy fasta	STXBP2	chr19	7632110	7652873
STXBP2_chr19_7632110_7652873	0/0	a0006	593	2	0	0	2	0	0	copy fasta	STXBP2	chr19	7632110	7652873
STXBP2_chr19_7632110_7652873	0/0	a0007	593	1	0	0	0	0	1	copy fasta	STXBP2	chr19	7632110	7652873
STXBP2_chr19_7632110_7652873	0/0	a0008	593	1	1	0	0	0	0	copy fasta	STXBP2	chr19	7632110	7652873
STXBP2_chr19_7632110_7652873	0/0	a0009	593	1	0	0	1	0	0	copy fasta	STXBP2	chr19	7632110	7652873
STXBP2_chr19_7632110_7652873	0/0	a0010	593	1	0	0	0	0	1	copy fasta	STXBP2	chr19	7632110	7652873
STXBP2_chr19_7632110_7652873	0/0	a0011	593	1	0	0	1	0	0	copy fasta	STXBP2	chr19	7632110	7652873
STXBP2_chr19_7632110_7652873	0/0	a0012	593	1	0	1	0	0	0	copy fasta	STXBP2	chr19	7632110	7652873
STXBP3_chr1_108741674_108814523	1/1	a0001	592	319	94	60	117	14	32	copy fasta	STXBP3	chr1	108741674	108814523
STXBP3_chr1_108741674_108814523	0/0	a0002	592	14	0	0	11	0	3	copy fasta	STXBP3	chr1	108741674	108814523
STXBP3_chr1_108741674_108814523	0/0	a0003	592	1	0	0	0	0	1	copy fasta	STXBP3	chr1	108741674	108814523
STXBP4_chr17_54963765_55178632	0/1	a0001	553	312	63	48	161	4	35	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	1/0	a0002	553	37	5	15	11	2	3	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	a0003	553	22	20	2	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	a0004	553	2	2	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	a0005	553	1	0	0	1	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	a0006	553	1	0	0	1	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	a0007	553	1	0	1	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	a0008	553	1	1	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	a0009	553	1	1	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP5L_chr3_120903205_121429761	1/1	a0001	1162	244	70	49	84	12	27	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	a0002	1162	20	0	17	1	0	2	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	a0003	1162	17	10	1	0	4	2	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	a0004	1162	4	4	0	0	0	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	a0005	1162	1	1	0	0	0	0	copy fasta	STXBP5L	chr3	120903205	121429761