JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
STXBP5L_chr3_120903205_121429761	0/0	a0006	1162	1	0	0	1	0	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	a0007	1162	1	0	1	0	0	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	a0008	1162	1	0	0	0	0	1	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	a0009	1162	1	1	0	0	0	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5_chr6_147199417_147395473	1/1	a0001	1151	216	58	28	108	7	13	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	a0002	1151	126	28	26	47	6	19	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	a0003	1151	4	3	1	0	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	a0004	1151	1	1	0	0	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	a0005	1151	1	0	1	0	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	a0006	1151	1	0	0	0	1	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	a0007	1151	1	0	0	1	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP6_chr14_24804454_25055147	1/1	a0001	210	241	76	52	70	8	33	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	a0002	210	1	0	0	0	0	1	copy fasta	STXBP6	chr14	24804454	25055147
STYK1_chr12_10613923_10679052	0/1	a0001	422	196	28	42	89	10	26	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	1/0	a0002	422	164	57	26	54	8	18	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/0	a0003	422	6	4	2	0	0	0	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/0	a0004	422	1	1	0	0	0	0	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/0	a0005	422	1	0	0	1	0	0	copy fasta	STYK1	chr12	10613923	10679052
STYXL1_chr7_75991342_76053000	1/1	a0001	313	315	80	52	126	16	39	copy fasta	STYXL1	chr7	75991342	76053000
STYXL1_chr7_75991342_76053000	0/0	a0002	313	33	0	6	26	0	1	copy fasta	STYXL1	chr7	75991342	76053000
STYXL1_chr7_75991342_76053000	0/0	a0003	313	4	0	4	0	0	0	copy fasta	STYXL1	chr7	75991342	76053000
STYXL1_chr7_75991342_76053000	0/0	a0004	313	2	2	0	0	0	0	copy fasta	STYXL1	chr7	75991342	76053000
STYXL1_chr7_75991342_76053000	0/0	a0005	51	1	0	1	0	0	0	copy fasta	STYXL1	chr7	75991342	76053000
STYXL1_chr7_75991342_76053000	0/0	a0006	313	1	0	1	0	0	0	copy fasta	STYXL1	chr7	75991342	76053000
STYXL2_chr1_167089075_167134165	0/0	a0001	1158	127	29	15	77	0	6	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	1/0	a0002	1158	102	10	39	7	10	35	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	a0003	1158	70	39	8	17	3	3	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/1	a0004	1158	15	0	9	0	3	2	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	a0005	1158	12	0	0	12	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	a0006	1158	9	9	0	0	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	a0007	1158	6	4	2	0	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	a0008	1158	3	3	0	0	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	a0009	1157	3	0	0	3	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	a0010	1158	2	0	0	2	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	a0011	1158	1	0	0	1	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	a0012	1158	1	0	0	1	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	a0013	1158	1	0	0	1	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	a0014	1158	1	0	1	0	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	a0015	1158	1	0	0	1	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	a0016	1158	1	0	0	1	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	a0017	1158	1	1	0	0	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	a0018	1158	1	0	0	1	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	a0019	1158	1	1	0	0	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	a0020	1158	1	0	1	0	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	a0021	1158	1	0	1	0	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	a0022	465	1	1	0	0	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	a0023	1158	1	1	0	0	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYX_chr14_52725166_52779989	1/1	a0001	223	369	88	68	161	14	36	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	a0002	223	1	0	0	1	0	0	copy fasta	STYX	chr14	52725166	52779989
SUB1_chr5_32580557_32609079	1/1	a0001	127	446	92	74	214	16	48	copy fasta	SUB1	chr5	32580557	32609079