JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SULT1A2_chr16_28586943_28602050	0/0	a0013	295	1	1	0	0	0	0	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/0	a0014	295	1	0	0	1	0	0	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/0	a0015	295	1	0	0	1	0	0	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/0	a0016	295	1	1	0	0	0	0	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A3_chr16_30194255_30209310	0/0	a0001	295	150	25	26	68	8	23	copy fasta	SULT1A3	chr16	30194255	30209310
SULT1A3_chr16_30194255_30209310	0/0	a0002	295	1	1	0	0	0	0	copy fasta	SULT1A3	chr16	30194255	30209310
SULT1A3_chr16_30194255_30209310	0/0	a0003	295	1	1	0	0	0	0	copy fasta	SULT1A3	chr16	30194255	30209310
SULT1A3_chr16_30194255_30209310	0/0	a0004	295	1	1	0	0	0	0	copy fasta	SULT1A3	chr16	30194255	30209310
SULT1A3_chr16_30194255_30209310	0/0	a0005	295	1	0	0	0	0	1	copy fasta	SULT1A3	chr16	30194255	30209310
SULT1A4_chr16_29454913_29469966	0/0	a0001	295	166	26	43	70	6	21	copy fasta	SULT1A4	chr16	29454913	29469966
SULT1A4_chr16_29454913_29469966	0/0	a0002	295	2	2	0	0	0	0	copy fasta	SULT1A4	chr16	29454913	29469966
SULT1A4_chr16_29454913_29469966	0/0	a0003	295	1	1	0	0	0	0	copy fasta	SULT1A4	chr16	29454913	29469966
SULT1A4_chr16_29454913_29469966	0/0	a0004	295	1	0	1	0	0	0	copy fasta	SULT1A4	chr16	29454913	29469966
SULT1A4_chr16_29454913_29469966	0/0	a0005	295	1	1	0	0	0	0	copy fasta	SULT1A4	chr16	29454913	29469966
SULT1A4_chr16_29454913_29469966	0/0	a0006	295	1	0	0	1	0	0	copy fasta	SULT1A4	chr16	29454913	29469966
SULT1A4_chr16_29454913_29469966	0/0	a0007	295	1	0	0	1	0	0	copy fasta	SULT1A4	chr16	29454913	29469966
SULT1A4_chr16_29454913_29469966	0/0	a0008	295	1	0	0	0	0	1	copy fasta	SULT1A4	chr16	29454913	29469966
SULT1B1_chr4_69716167_69765620	1/1	a0001	296	397	75	71	197	16	36	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	a0002	296	7	7	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	a0003	296	2	1	1	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	a0004	296	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	a0005	296	1	0	0	1	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1C2_chr2_108283895_108314915	1/1	a0001	296	298	82	63	96	12	43	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	a0002	296	27	3	5	17	2	0	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	a0003	289	6	6	0	0	0	0	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	a0004	296	3	0	0	1	0	2	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	a0005	296	1	0	0	1	0	0	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	a0006	296	1	1	0	0	0	0	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	a0007	296	1	1	0	0	0	0	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	a0008	296	1	1	0	0	0	0	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	a0009	296	1	0	0	0	0	1	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	a0010	289	1	1	0	0	0	0	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	a0011	296	1	1	0	0	0	0	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	a0012	296	1	0	0	1	0	0	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C3_chr2_108234968_108265886	0/0	a0001	304	157	19	30	95	3	10	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	1/0	a0002	304	79	22	19	21	7	9	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/1	a0003	232	54	1	17	16	5	14	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	a0004	304	31	9	3	11	1	7	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	a0005	304	8	4	2	2	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	a0006	35	6	3	0	0	0	3	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	a0007	304	4	4	0	0	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	a0008	304	4	4	0	0	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	a0009	304	4	4	0	0	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	a0010	304	4	3	1	0	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	a0011	304	4	4	0	0	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	a0012	304	4	4	0	0	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	a0013	304	4	4	0	0	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	a0014	304	3	0	0	3	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	a0015	61	1	0	0	1	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	a0016	304	1	1	0	0	0	0	copy fasta	SULT1C3	chr2	108234968	108265886