JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SULT1C3_chr2_108234968_108265886	0/0	a0017	304	1	1	0	0	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	a0018	304	1	1	0	0	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	a0019	224	1	0	0	1	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	a0020	304	1	1	0	0	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	a0021	304	1	1	0	0	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	a0022	232	1	0	0	1	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	a0023	304	1	0	0	1	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	a0024	232	1	0	0	0	0	1	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C4_chr2_108372954_108393989	0/0	a0001	302	167	82	20	39	4	22	copy fasta	SULT1C4	chr2	108372954	108393989
SULT1C4_chr2_108372954_108393989	1/1	a0002	302	157	11	42	74	10	18	copy fasta	SULT1C4	chr2	108372954	108393989
SULT1C4_chr2_108372954_108393989	0/0	a0003	302	1	0	0	1	0	0	copy fasta	SULT1C4	chr2	108372954	108393989
SULT1C4_chr2_108372954_108393989	0/0	a0004	302	1	1	0	0	0	0	copy fasta	SULT1C4	chr2	108372954	108393989
SULT1E1_chr4_69836212_69865145	1/1	a0001	294	444	86	74	224	18	40	copy fasta	SULT1E1	chr4	69836212	69865145
SULT1E1_chr4_69836212_69865145	0/0	a0002	294	1	1	0	0	0	0	copy fasta	SULT1E1	chr4	69836212	69865145
SULT1E1_chr4_69836212_69865145	0/0	a0003	294	1	1	0	0	0	0	copy fasta	SULT1E1	chr4	69836212	69865145
SULT2A1_chr19_47865467_47891315	1/1	a0001	285	413	66	81	200	16	48	copy fasta	SULT2A1	chr19	47865467	47891315
SULT2A1_chr19_47865467_47891315	0/0	a0002	285	11	10	1	0	0	0	copy fasta	SULT2A1	chr19	47865467	47891315
SULT2A1_chr19_47865467_47891315	0/0	a0003	285	4	4	0	0	0	0	copy fasta	SULT2A1	chr19	47865467	47891315
SULT2A1_chr19_47865467_47891315	0/0	a0004	73	1	0	0	1	0	0	copy fasta	SULT2A1	chr19	47865467	47891315
SULT2A1_chr19_47865467_47891315	0/0	a0005	285	1	1	0	0	0	0	copy fasta	SULT2A1	chr19	47865467	47891315
SULT2A1_chr19_47865467_47891315	0/0	a0006	285	1	0	0	1	0	0	copy fasta	SULT2A1	chr19	47865467	47891315
SULT2A1_chr19_47865467_47891315	0/0	a0007	285	1	1	0	0	0	0	copy fasta	SULT2A1	chr19	47865467	47891315
SULT2B1_chr19_48547172_48604423	1/1	a0001	365	356	92	81	131	11	39	copy fasta	SULT2B1	chr19	48547172	48604423
SULT2B1_chr19_48547172_48604423	0/0	a0002	365	9	0	0	9	0	0	copy fasta	SULT2B1	chr19	48547172	48604423
SULT2B1_chr19_48547172_48604423	0/0	a0003	365	4	4	0	0	0	0	copy fasta	SULT2B1	chr19	48547172	48604423
SULT2B1_chr19_48547172_48604423	0/0	a0004	365	2	1	1	0	0	0	copy fasta	SULT2B1	chr19	48547172	48604423
SULT2B1_chr19_48547172_48604423	0/0	a0005	365	1	0	0	0	0	1	copy fasta	SULT2B1	chr19	48547172	48604423
SULT2B1_chr19_48547172_48604423	0/0	a0006	365	1	0	0	1	0	0	copy fasta	SULT2B1	chr19	48547172	48604423
SULT2B1_chr19_48547172_48604423	0/0	a0007	365	1	1	0	0	0	0	copy fasta	SULT2B1	chr19	48547172	48604423
SULT2B1_chr19_48547172_48604423	0/0	a0008	359	1	0	0	1	0	0	copy fasta	SULT2B1	chr19	48547172	48604423
SULT2B1_chr19_48547172_48604423	0/0	a0009	365	1	0	0	0	1	0	copy fasta	SULT2B1	chr19	48547172	48604423
SULT4A1_chr22_43819509_43867513	1/1	a0001	284	384	91	70	164	18	39	copy fasta	SULT4A1	chr22	43819509	43867513
SULT4A1_chr22_43819509_43867513	0/0	a0002	284	1	1	0	0	0	0	copy fasta	SULT4A1	chr22	43819509	43867513
SULT4A1_chr22_43819509_43867513	0/0	a0003	284	1	0	0	0	0	1	copy fasta	SULT4A1	chr22	43819509	43867513
SULT6B1_chr2_37162820_37193670	1/1	a0001	303	169	60	43	46	9	9	copy fasta	SULT6B1	chr2	37162820	37193670
SULT6B1_chr2_37162820_37193670	0/0	a0002	303	164	13	28	103	2	18	copy fasta	SULT6B1	chr2	37162820	37193670
SULT6B1_chr2_37162820_37193670	0/0	a0003	303	5	4	1	0	0	0	copy fasta	SULT6B1	chr2	37162820	37193670
SULT6B1_chr2_37162820_37193670	0/0	a0004	303	3	1	0	0	1	1	copy fasta	SULT6B1	chr2	37162820	37193670
SULT6B1_chr2_37162820_37193670	0/0	a0005	303	2	0	0	2	0	0	copy fasta	SULT6B1	chr2	37162820	37193670
SULT6B1_chr2_37162820_37193670	0/0	a0006	303	2	0	0	0	1	1	copy fasta	SULT6B1	chr2	37162820	37193670
SULT6B1_chr2_37162820_37193670	0/0	a0007	303	2	2	0	0	0	0	copy fasta	SULT6B1	chr2	37162820	37193670
SULT6B1_chr2_37162820_37193670	0/0	a0008	303	2	0	0	0	1	1	copy fasta	SULT6B1	chr2	37162820	37193670
SULT6B1_chr2_37162820_37193670	0/0	a0009	303	1	1	0	0	0	0	copy fasta	SULT6B1	chr2	37162820	37193670
SULT6B1_chr2_37162820_37193670	0/0	a0010	303	1	1	0	0	0	0	copy fasta	SULT6B1	chr2	37162820	37193670
SULT6B1_chr2_37162820_37193670	0/0	a0011	303	1	1	0	0	0	0	copy fasta	SULT6B1	chr2	37162820	37193670
SULT6B1_chr2_37162820_37193670	0/0	a0012	303	1	0	0	1	0	0	copy fasta	SULT6B1	chr2	37162820	37193670
SULT6B1_chr2_37162820_37193670	0/0	a0013	303	1	1	0	0	0	0	copy fasta	SULT6B1	chr2	37162820	37193670
SUMF1_chr3_4356146_4472269	1/1	a0001	374	359	83	63	168	10	33	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	0/0	a0002	374	22	7	7	0	4	4	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	0/0	a0003	374	6	6	0	0	0	0	copy fasta	SUMF1	chr3	4356146	4472269