JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SUMF1_chr3_4356146_4472269	0/0	a0004	374	1	1	0	0	0	0	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	0/0	a0005	374	1	1	0	0	0	0	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	0/0	a0006	374	1	0	0	1	0	0	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	0/0	a0007	374	1	0	0	0	0	1	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	0/0	a0008	374	1	0	0	1	0	0	copy fasta	SUMF1	chr3	4356146	4472269
SUMF2_chr7_56059286_56085670	0/1	a0001	301	402	84	78	187	14	38	copy fasta	SUMF2	chr7	56059286	56085670
SUMF2_chr7_56059286_56085670	0/0	a0002	301	2	0	0	0	0	2	copy fasta	SUMF2	chr7	56059286	56085670
SUMF2_chr7_56059286_56085670	0/0	a0003	301	2	2	0	0	0	0	copy fasta	SUMF2	chr7	56059286	56085670
SUMF2_chr7_56059286_56085670	1/0	a0004	301	1	0	0	0	0	0	copy fasta	SUMF2	chr7	56059286	56085670
SUMF2_chr7_56059286_56085670	0/0	a0005	301	1	1	0	0	0	0	copy fasta	SUMF2	chr7	56059286	56085670
SUMF2_chr7_56059286_56085670	0/0	a0006	301	1	1	0	0	0	0	copy fasta	SUMF2	chr7	56059286	56085670
SUMF2_chr7_56059286_56085670	0/0	a0007	301	1	0	0	0	0	1	copy fasta	SUMF2	chr7	56059286	56085670
SUMF2_chr7_56059286_56085670	0/0	a0008	301	1	0	0	0	0	1	copy fasta	SUMF2	chr7	56059286	56085670
SUMF2_chr7_56059286_56085670	0/0	a0009	301	1	0	0	1	0	0	copy fasta	SUMF2	chr7	56059286	56085670
SUMO1_chr2_202201182_202243597	1/1	a0001	101	374	88	76	144	18	46	copy fasta	SUMO1	chr2	202201182	202243597
SUMO2_chr17_75160586_75187959	1/1	a0001	95	398	94	76	168	12	46	copy fasta	SUMO2	chr17	75160586	75187959
SUMO3_chr21_44800617_44823062	1/1	a0001	103	399	87	74	178	16	42	copy fasta	SUMO3	chr21	44800617	44823062
SUMO3_chr21_44800617_44823062	0/0	a0002	103	7	7	0	0	0	0	copy fasta	SUMO3	chr21	44800617	44823062
SUMO4_chr6_149395262_149406278	0/1	a0001	95	275	71	47	122	8	26	copy fasta	SUMO4	chr6	149395262	149406278
SUMO4_chr6_149395262_149406278	1/0	a0002	95	134	21	30	54	6	22	copy fasta	SUMO4	chr6	149395262	149406278
SUMO4_chr6_149395262_149406278	0/0	a0003	17	7	6	1	0	0	0	copy fasta	SUMO4	chr6	149395262	149406278
SUMO4_chr6_149395262_149406278	0/0	a0004	95	2	2	0	0	0	0	copy fasta	SUMO4	chr6	149395262	149406278
SUN1_chr7_827476_879934	0/0	a0001	785	191	48	34	85	5	19	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	1/1	a0002	785	123	25	24	50	6	16	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	a0003	785	64	8	15	27	3	11	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	a0004	785	10	0	0	10	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	a0005	785	6	5	1	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	a0006	785	5	5	0	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	a0007	785	2	0	0	2	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	a0008	785	2	2	0	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	a0009	785	2	0	0	2	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	a0010	785	1	0	0	1	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	a0011	785	1	1	0	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	a0012	785	1	0	0	1	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	a0013	785	1	0	0	1	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	a0014	785	1	1	0	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	a0015	785	1	0	1	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	a0016	785	1	1	0	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	a0017	296	1	0	0	1	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	a0018	785	1	1	0	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	a0019	785	1	1	0	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	a0020	785	1	0	0	1	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	a0021	785	1	0	0	1	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	a0022	785	1	0	1	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN2_chr22_38729734_38760998	1/1	a0001	717	251	83	57	69	9	31	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	a0002	717	29	0	1	20	1	7	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	a0003	717	25	0	0	24	1	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	a0004	717	18	0	0	17	0	1	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	a0005	198	9	1	2	6	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	a0006	717	3	3	0	0	0	0	copy fasta	SUN2	chr22	38729734	38760998