JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SUN2_chr22_38729734_38760998	0/0	a0007	717	3	1	1	0	1	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	a0008	717	2	2	0	0	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	a0009	198	1	0	0	1	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	a0010	717	1	1	0	0	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	a0011	717	1	0	0	0	0	1	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	a0012	717	1	0	1	0	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	a0013	717	1	0	0	1	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	a0014	717	1	0	1	0	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	a0015	717	1	1	0	0	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	a0016	717	1	0	0	1	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	a0017	717	1	0	1	0	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	a0018	717	1	0	0	1	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN3_chr7_47982148_48034107	1/1	a0001	357	406	93	69	194	14	34	copy fasta	SUN3	chr7	47982148	48034107
SUN3_chr7_47982148_48034107	0/0	a0002	357	2	0	0	2	0	0	copy fasta	SUN3	chr7	47982148	48034107
SUN3_chr7_47982148_48034107	0/0	a0003	357	2	2	0	0	0	0	copy fasta	SUN3	chr7	47982148	48034107
SUN3_chr7_47982148_48034107	0/0	a0004	357	1	1	0	0	0	0	copy fasta	SUN3	chr7	47982148	48034107
SUN3_chr7_47982148_48034107	0/0	a0005	357	1	1	0	0	0	0	copy fasta	SUN3	chr7	47982148	48034107
SUN3_chr7_47982148_48034107	0/0	a0006	357	1	0	1	0	0	0	copy fasta	SUN3	chr7	47982148	48034107
SUN3_chr7_47982148_48034107	0/0	a0007	357	1	1	0	0	0	0	copy fasta	SUN3	chr7	47982148	48034107
SUN5_chr20_32978775_33009433	1/1	a0001	379	327	71	62	154	7	31	copy fasta	SUN5	chr20	32978775	33009433
SUN5_chr20_32978775_33009433	0/0	a0002	379	37	8	15	5	7	2	copy fasta	SUN5	chr20	32978775	33009433
SUN5_chr20_32978775_33009433	0/0	a0003	379	12	9	3	0	0	0	copy fasta	SUN5	chr20	32978775	33009433
SUN5_chr20_32978775_33009433	0/0	a0004	379	3	3	0	0	0	0	copy fasta	SUN5	chr20	32978775	33009433
SUN5_chr20_32978775_33009433	0/0	a0005	379	2	0	0	1	0	1	copy fasta	SUN5	chr20	32978775	33009433
SUN5_chr20_32978775_33009433	0/0	a0006	379	1	1	0	0	0	0	copy fasta	SUN5	chr20	32978775	33009433
SUOX_chr12_55992276_56010525	1/1	a0001	545	413	95	80	184	18	34	copy fasta	SUOX	chr12	55992276	56010525
SUOX_chr12_55992276_56010525	0/0	a0002	545	4	1	0	3	0	0	copy fasta	SUOX	chr12	55992276	56010525
SUOX_chr12_55992276_56010525	0/0	a0003	545	1	0	0	1	0	0	copy fasta	SUOX	chr12	55992276	56010525
SUOX_chr12_55992276_56010525	0/0	a0004	545	1	1	0	0	0	0	copy fasta	SUOX	chr12	55992276	56010525
SUOX_chr12_55992276_56010525	0/0	a0005	545	1	1	0	0	0	0	copy fasta	SUOX	chr12	55992276	56010525
SUOX_chr12_55992276_56010525	0/0	a0006	545	1	0	0	1	0	0	copy fasta	SUOX	chr12	55992276	56010525
SUOX_chr12_55992276_56010525	0/0	a0007	545	1	0	0	1	0	0	copy fasta	SUOX	chr12	55992276	56010525
SUPT16H_chr14_21346476_21389019	1/1	a0001	1047	306	94	54	124	14	18	copy fasta	SUPT16H	chr14	21346476	21389019
SUPT16H_chr14_21346476_21389019	0/0	a0002	1047	2	2	0	0	0	0	copy fasta	SUPT16H	chr14	21346476	21389019
SUPT20HL1_chrX_24355639_24372839	1/0	a0001	887	92	5	21	49	7	9	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0002	886	32	0	0	28	0	4	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0003	878	31	17	3	5	0	6	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0004	880	23	16	1	5	1	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/1	a0005	890	17	1	3	9	0	3	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0006	888	12	0	4	8	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0007	879	12	2	4	6	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0008	884	11	0	0	11	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0009	884	9	4	0	5	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0010	891	8	0	1	4	0	3	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0011	875	7	6	1	0	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0012	886	6	3	1	1	0	1	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0013	894	4	0	1	3	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0014	889	4	1	0	0	1	2	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0015	881	4	1	2	0	0	1	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0016	885	4	3	0	1	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839