JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SUPT20HL1_chrX_24355639_24372839	0/0	a0017	888	3	2	1	0	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0018	892	3	0	0	3	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0019	889	3	0	0	3	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0020	877	3	3	0	0	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0021	883	3	1	1	1	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0022	886	2	0	0	2	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0023	893	2	0	2	0	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0024	888	2	0	0	0	2	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0025	891	2	0	0	2	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0026	887	2	0	0	2	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0027	876	2	1	1	0	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0028	886	1	0	0	1	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0029	894	1	0	0	0	0	1	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0030	890	1	0	0	0	0	1	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0031	891	1	1	0	0	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0032	895	1	0	0	1	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0033	887	1	0	1	0	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0034	889	1	0	0	1	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0035	878	1	0	0	0	0	1	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0036	894	1	0	0	1	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0037	885	1	0	0	1	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0038	867	1	1	0	0	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0039	874	1	0	0	1	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	a0040	138	1	0	0	1	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL2_chrX_24303210_24319069	1/1	a0001	817	251	46	41	129	9	24	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	a0002	817	14	14	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	a0003	819	6	6	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	a0004	815	5	3	1	1	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	a0005	817	4	0	4	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	a0006	817	2	1	1	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	a0007	821	2	2	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	a0008	817	1	0	0	0	0	1	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	a0009	817	1	0	0	1	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	a0010	800	1	0	1	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	a0011	817	1	0	1	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	a0012	817	1	0	0	1	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	a0013	819	1	1	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	a0014	824	1	0	0	1	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	a0015	817	1	1	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	a0016	817	1	0	1	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20H_chr13_37004312_37064688	1/1	a0001	779	166	65	38	42	6	13	copy fasta	SUPT20H	chr13	37004312	37064688
SUPT20H_chr13_37004312_37064688	0/0	a0002	779	112	8	25	62	2	15	copy fasta	SUPT20H	chr13	37004312	37064688
SUPT20H_chr13_37004312_37064688	0/0	a0003	779	12	12	0	0	0	0	copy fasta	SUPT20H	chr13	37004312	37064688
SUPT20H_chr13_37004312_37064688	0/0	a0004	779	4	0	0	4	0	0	copy fasta	SUPT20H	chr13	37004312	37064688
SUPT20H_chr13_37004312_37064688	0/0	a0005	779	2	2	0	0	0	0	copy fasta	SUPT20H	chr13	37004312	37064688
SUPT20H_chr13_37004312_37064688	0/0	a0006	779	2	0	0	2	0	0	copy fasta	SUPT20H	chr13	37004312	37064688
SUPT20H_chr13_37004312_37064688	0/0	a0007	779	1	0	1	0	0	0	copy fasta	SUPT20H	chr13	37004312	37064688
SUPT20H_chr13_37004312_37064688	0/0	a0008	779	1	0	1	0	0	0	copy fasta	SUPT20H	chr13	37004312	37064688
SUPT20H_chr13_37004312_37064688	0/0	a0009	779	1	1	0	0	0	0	copy fasta	SUPT20H	chr13	37004312	37064688
SUPT20H_chr13_37004312_37064688	0/0	a0010	779	1	0	0	1	0	0	copy fasta	SUPT20H	chr13	37004312	37064688