JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SUPT20H_chr13_37004312_37064688	0/0	a0011	779	1	0	0	1	0	0	copy fasta	SUPT20H	chr13	37004312	37064688
SUPT20H_chr13_37004312_37064688	0/0	a0012	779	1	0	1	0	0	0	copy fasta	SUPT20H	chr13	37004312	37064688
SUPT3H_chr6_44821726_45382934	0/0	a0001	317	259	77	54	96	6	26	copy fasta	SUPT3H	chr6	44821726	45382934
SUPT3H_chr6_44821726_45382934	0/0	a0002	317	2	2	0	0	0	0	copy fasta	SUPT3H	chr6	44821726	45382934
SUPT3H_chr6_44821726_45382934	0/0	a0003	317	1	1	0	0	0	0	copy fasta	SUPT3H	chr6	44821726	45382934
SUPT4H1_chr17_58340178_58357201	1/1	a0001	117	438	100	84	192	16	44	copy fasta	SUPT4H1	chr17	58340178	58357201
SUPT5H_chr19_39440582_39481670	1/1	a0001	1087	375	90	60	165	16	42	copy fasta	SUPT5H	chr19	39440582	39481670
SUPT5H_chr19_39440582_39481670	0/0	a0002	1087	1	0	0	1	0	0	copy fasta	SUPT5H	chr19	39440582	39481670
SUPT5H_chr19_39440582_39481670	0/0	a0003	1087	1	0	0	1	0	0	copy fasta	SUPT5H	chr19	39440582	39481670
SUPT5H_chr19_39440582_39481670	0/0	a0004	1087	1	0	0	1	0	0	copy fasta	SUPT5H	chr19	39440582	39481670
SUPT6H_chr17_28657205_28707679	1/1	a0001	1726	233	73	48	81	6	23	copy fasta	SUPT6H	chr17	28657205	28707679
SUPT6H_chr17_28657205_28707679	0/0	a0002	1726	1	0	0	0	0	1	copy fasta	SUPT6H	chr17	28657205	28707679
SUPT6H_chr17_28657205_28707679	0/0	a0003	1726	1	1	0	0	0	0	copy fasta	SUPT6H	chr17	28657205	28707679
SUPT6H_chr17_28657205_28707679	0/0	a0004	1726	1	0	0	1	0	0	copy fasta	SUPT6H	chr17	28657205	28707679
SUPT7L_chr2_27645809_27668614	1/1	a0001	414	362	81	65	160	16	38	copy fasta	SUPT7L	chr2	27645809	27668614
SUPT7L_chr2_27645809_27668614	0/0	a0002	414	1	1	0	0	0	0	copy fasta	SUPT7L	chr2	27645809	27668614
SUPT7L_chr2_27645809_27668614	0/0	a0003	414	1	0	0	1	0	0	copy fasta	SUPT7L	chr2	27645809	27668614
SUPT7L_chr2_27645809_27668614	0/0	a0004	414	1	0	0	1	0	0	copy fasta	SUPT7L	chr2	27645809	27668614
SUPT7L_chr2_27645809_27668614	0/0	a0005	414	1	0	1	0	0	0	copy fasta	SUPT7L	chr2	27645809	27668614
SUPV3L1_chr10_69175234_69214093	1/1	a0001	786	335	80	45	157	13	38	copy fasta	SUPV3L1	chr10	69175234	69214093
SUPV3L1_chr10_69175234_69214093	0/0	a0002	786	11	11	0	0	0	0	copy fasta	SUPV3L1	chr10	69175234	69214093
SUPV3L1_chr10_69175234_69214093	0/0	a0003	786	3	0	1	0	2	0	copy fasta	SUPV3L1	chr10	69175234	69214093
SUPV3L1_chr10_69175234_69214093	0/0	a0004	786	2	0	0	0	0	2	copy fasta	SUPV3L1	chr10	69175234	69214093
SUPV3L1_chr10_69175234_69214093	0/0	a0005	786	1	0	0	1	0	0	copy fasta	SUPV3L1	chr10	69175234	69214093
SUPV3L1_chr10_69175234_69214093	0/0	a0006	786	1	0	0	0	1	0	copy fasta	SUPV3L1	chr10	69175234	69214093
SUPV3L1_chr10_69175234_69214093	0/0	a0007	786	1	1	0	0	0	0	copy fasta	SUPV3L1	chr10	69175234	69214093
SURF1_chr9_133346758_133361487	1/1	a0001	300	415	94	78	177	18	46	copy fasta	SURF1	chr9	133346758	133361487
SURF1_chr9_133346758_133361487	0/0	a0002	300	25	0	0	25	0	0	copy fasta	SURF1	chr9	133346758	133361487
SURF1_chr9_133346758_133361487	0/0	a0003	300	2	2	0	0	0	0	copy fasta	SURF1	chr9	133346758	133361487
SURF1_chr9_133346758_133361487	0/0	a0004	300	2	2	0	0	0	0	copy fasta	SURF1	chr9	133346758	133361487
SURF2_chr9_133351550_133366158	1/0	a0001	256	293	68	41	144	16	23	copy fasta	SURF2	chr9	133351550	133366158
SURF2_chr9_133351550_133366158	0/1	a0002	256	118	17	33	49	2	16	copy fasta	SURF2	chr9	133351550	133366158
SURF2_chr9_133351550_133366158	0/0	a0003	111	14	2	4	8	0	0	copy fasta	SURF2	chr9	133351550	133366158
SURF2_chr9_133351550_133366158	0/0	a0004	256	8	8	0	0	0	0	copy fasta	SURF2	chr9	133351550	133366158
SURF2_chr9_133351550_133366158	0/0	a0005	256	7	0	5	0	0	2	copy fasta	SURF2	chr9	133351550	133366158
SURF2_chr9_133351550_133366158	0/0	a0006	256	3	3	0	0	0	0	copy fasta	SURF2	chr9	133351550	133366158
SURF2_chr9_133351550_133366158	0/0	a0007	111	1	0	1	0	0	0	copy fasta	SURF2	chr9	133351550	133366158
SURF2_chr9_133351550_133366158	0/0	a0008	256	1	1	0	0	0	0	copy fasta	SURF2	chr9	133351550	133366158
SURF2_chr9_133351550_133366158	0/0	a0009	256	1	0	0	0	0	1	copy fasta	SURF2	chr9	133351550	133366158
SURF2_chr9_133351550_133366158	0/0	a0010	256	1	1	0	0	0	0	copy fasta	SURF2	chr9	133351550	133366158
SURF2_chr9_133351550_133366158	0/0	a0011	256	1	0	0	1	0	0	copy fasta	SURF2	chr9	133351550	133366158
SURF4_chr9_133356464_133381060	1/1	a0001	269	422	98	82	180	16	44	copy fasta	SURF4	chr9	133356464	133381060
SURF4_chr9_133356464_133381060	0/0	a0002	269	2	0	0	2	0	0	copy fasta	SURF4	chr9	133356464	133381060
SURF6_chr9_133323776_133341188	1/0	a0001	361	287	87	45	119	16	19	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/1	a0002	361	106	3	30	51	2	19	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	a0003	361	6	0	0	5	0	1	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	a0004	361	2	1	1	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	a0005	361	2	2	0	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	a0006	361	2	2	0	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	a0007	361	1	1	0	0	0	0	copy fasta	SURF6	chr9	133323776	133341188