JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SURF6_chr9_133323776_133341188	0/0	a0008	361	1	1	0	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	a0009	361	1	0	0	1	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	a0010	361	1	0	0	0	0	1	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	a0011	361	1	1	0	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SUSD1_chr9_112035783_112180297	1/1	a0001	799	322	74	66	133	14	33	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	a0002	799	3	3	0	0	0	0	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	a0003	799	2	2	0	0	0	0	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	a0004	799	2	0	0	2	0	0	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	a0005	803	2	2	0	0	0	0	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	a0006	799	1	1	0	0	0	0	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	a0007	799	1	0	0	1	0	0	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	a0008	799	1	0	0	0	0	1	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	a0009	799	1	0	0	1	0	0	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	a0010	799	1	0	0	0	0	1	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	a0011	799	1	0	0	0	0	1	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	a0012	799	1	0	0	1	0	0	copy fasta	SUSD1	chr9	112035783	112180297
SUSD2_chr22_24176487_24194106	1/1	a0001	822	340	60	55	165	18	40	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	a0002	822	35	10	5	16	0	4	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	a0003	822	10	5	5	0	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	a0004	822	5	4	1	0	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	a0005	822	4	0	0	4	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	a0006	822	3	3	0	0	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	a0007	822	3	0	0	3	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	a0008	822	3	0	0	0	0	3	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	a0009	822	2	2	0	0	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	a0010	822	2	0	2	0	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	a0011	822	2	0	0	0	0	2	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	a0012	822	2	0	2	0	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	a0013	822	2	0	0	2	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	a0014	822	2	2	0	0	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	a0015	822	1	0	0	1	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	a0016	822	1	0	0	1	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	a0017	822	1	0	0	0	0	1	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	a0018	822	1	1	0	0	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	a0019	822	1	0	0	1	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	a0020	822	1	1	0	0	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	a0021	822	1	0	0	1	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD3_chr9_93053701_93090133	1/1	a0001	255	237	59	39	102	10	25	copy fasta	SUSD3	chr9	93053701	93090133
SUSD3_chr9_93053701_93090133	0/0	a0002	255	98	31	9	42	0	16	copy fasta	SUSD3	chr9	93053701	93090133
SUSD3_chr9_93053701_93090133	0/0	a0003	255	3	3	0	0	0	0	copy fasta	SUSD3	chr9	93053701	93090133
SUSD3_chr9_93053701_93090133	0/0	a0004	255	1	0	0	0	0	1	copy fasta	SUSD3	chr9	93053701	93090133
SUSD3_chr9_93053701_93090133	0/0	a0005	255	1	1	0	0	0	0	copy fasta	SUSD3	chr9	93053701	93090133
SUSD4_chr1_223215831_223369176	1/1	a0001	490	247	62	44	98	10	31	copy fasta	SUSD4	chr1	223215831	223369176
SUSD4_chr1_223215831_223369176	0/0	a0002	489	14	0	0	11	0	3	copy fasta	SUSD4	chr1	223215831	223369176
SUSD4_chr1_223215831_223369176	0/0	a0003	491	10	8	1	1	0	0	copy fasta	SUSD4	chr1	223215831	223369176
SUSD4_chr1_223215831_223369176	0/0	a0004	490	2	2	0	0	0	0	copy fasta	SUSD4	chr1	223215831	223369176
SUSD4_chr1_223215831_223369176	0/0	a0005	489	1	0	0	1	0	0	copy fasta	SUSD4	chr1	223215831	223369176
SUSD4_chr1_223215831_223369176	0/0	a0006	490	1	0	0	1	0	0	copy fasta	SUSD4	chr1	223215831	223369176
SUSD4_chr1_223215831_223369176	0/0	a0007	490	1	0	1	0	0	0	copy fasta	SUSD4	chr1	223215831	223369176
SUSD5_chr3_33145043_33223810	0/0	a0001	629	203	41	27	115	2	18	copy fasta	SUSD5	chr3	33145043	33223810