JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SUSD5_chr3_33145043_33223810	0/1	a0002	629	103	21	20	43	4	14	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	a0003	629	67	18	14	21	3	11	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	1/0	a0004	629	12	1	9	0	1	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	a0005	629	5	5	0	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	a0006	629	2	1	1	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	a0007	629	2	2	0	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	a0008	629	1	0	1	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	a0009	629	1	1	0	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	a0010	629	1	0	1	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	a0011	629	1	1	0	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	a0012	629	1	0	1	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	a0013	629	1	0	0	0	0	1	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	a0014	629	1	1	0	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	a0015	629	1	0	0	1	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	a0016	629	1	1	0	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	a0017	629	1	1	0	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD6_chr14_69606596_69720144	1/1	a0001	303	284	83	42	113	12	32	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	a0002	303	1	1	0	0	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	a0003	303	1	1	0	0	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	a0004	303	1	0	0	1	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	a0005	303	1	1	0	0	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUV39H1_chrX_48691734_48714016	1/1	a0001	412	250	71	48	90	11	28	copy fasta	SUV39H1	chrX	48691734	48714016
SUV39H1_chrX_48691734_48714016	0/0	a0002	412	1	1	0	0	0	0	copy fasta	SUV39H1	chrX	48691734	48714016
SUV39H1_chrX_48691734_48714016	0/0	a0003	61	1	0	0	1	0	0	copy fasta	SUV39H1	chrX	48691734	48714016
SUV39H2_chr10_14873866_14909315	1/1	a0001	410	420	92	70	198	14	44	copy fasta	SUV39H2	chr10	14873866	14909315
SUZ12_chr17_31932007_32006038	1/1	a0001	739	280	80	58	94	12	34	copy fasta	SUZ12	chr17	31932007	32006038
SV2A_chr1_149898318_149922844	1/1	a0001	742	359	92	63	141	16	45	copy fasta	SV2A	chr1	149898318	149922844
SV2A_chr1_149898318_149922844	0/0	a0002	742	2	0	2	0	0	0	copy fasta	SV2A	chr1	149898318	149922844
SV2A_chr1_149898318_149922844	0/0	a0003	742	1	0	1	0	0	0	copy fasta	SV2A	chr1	149898318	149922844
SV2A_chr1_149898318_149922844	0/0	a0004	742	1	0	0	1	0	0	copy fasta	SV2A	chr1	149898318	149922844
SV2A_chr1_149898318_149922844	0/0	a0005	742	1	0	0	0	0	1	copy fasta	SV2A	chr1	149898318	149922844
SV2B_chr15_91095257_91307565	1/1	a0001	683	206	86	41	33	7	37	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	a0002	683	3	0	1	0	1	1	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	a0003	683	2	0	0	2	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	a0004	683	2	2	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	a0005	683	1	0	0	1	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2C_chr5_76078383_76338956	1/0	a0001	727	170	60	32	50	6	21	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	a0002	727	31	16	3	12	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/1	a0003	727	28	11	7	8	1	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	a0004	727	2	0	2	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	a0005	727	1	1	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	a0006	727	1	0	0	0	1	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	a0007	727	1	0	0	0	0	1	copy fasta	SV2C	chr5	76078383	76338956
SVBP_chr1_42802052_42822397	1/1	a0001	66	394	92	64	176	14	46	copy fasta	SVBP	chr1	42802052	42822397
SVEP1_chr9_110360248_110584741	0/0	a0001	3571	23	8	5	8	2	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0002	3571	22	3	0	17	0	2	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0003	3571	21	0	1	17	2	1	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0004	3571	18	3	0	13	0	2	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0005	3571	18	7	4	3	0	4	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0006	3571	16	0	4	9	0	3	copy fasta	SVEP1	chr9	110360248	110584741