JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SVEP1_chr9_110360248_110584741	0/0	a0007	3571	9	5	3	0	0	1	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0008	3571	8	0	1	4	1	2	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0009	3571	8	0	3	5	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0010	3571	8	0	3	0	3	2	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0011	3571	7	6	0	1	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0012	3571	7	0	0	7	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0013	3571	6	0	2	1	0	3	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0014	3571	6	0	0	6	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0015	3571	6	0	1	5	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0016	3571	6	4	2	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0017	3571	5	0	2	2	0	1	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0018	3571	5	0	2	2	0	1	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0019	3571	5	0	0	5	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0020	3571	4	0	0	1	1	2	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/1	a0021	3571	4	0	2	1	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0022	3571	4	0	0	4	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0023	3571	4	1	0	0	1	2	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0024	3571	4	0	4	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0025	3571	4	0	3	0	1	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	1/0	a0026	3571	4	2	0	1	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0027	3571	3	0	1	1	0	1	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0028	3571	3	1	0	2	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0029	3571	3	0	2	1	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0030	3571	3	3	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0031	3571	3	3	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0032	3571	3	3	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0033	3571	3	0	0	3	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0034	3571	3	3	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0035	3571	3	0	0	3	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0036	3571	3	0	2	0	1	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0037	3571	3	0	0	3	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0038	3571	3	0	0	1	0	2	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0039	3571	2	0	0	2	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0040	3571	2	0	1	0	0	1	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0041	3571	2	0	0	2	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0042	3571	2	2	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0043	3571	2	2	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0044	3571	2	2	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0045	3571	2	1	1	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0046	3571	2	0	0	2	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0047	3571	2	0	0	0	2	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0048	3571	2	0	1	0	1	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0049	3571	2	2	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0050	3571	2	0	0	2	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0051	3571	2	2	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0052	3571	2	2	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0053	3571	2	2	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0054	3571	2	0	2	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0055	3571	2	0	0	0	0	2	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0056	3571	2	0	0	0	0	2	copy fasta	SVEP1	chr9	110360248	110584741