JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SVEP1_chr9_110360248_110584741	0/0	a0057	3571	2	0	1	1	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0058	3571	2	0	0	1	0	1	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0059	3571	1	0	0	1	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0060	3571	1	0	0	0	0	1	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0061	3571	1	0	1	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0062	289	1	1	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0063	3571	1	0	0	1	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0064	3571	1	0	1	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0065	3571	1	0	0	0	0	1	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0066	3571	1	0	0	0	0	1	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0067	3571	1	0	0	1	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0068	3571	1	0	1	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0069	3571	1	1	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0070	3571	1	1	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0071	3571	1	1	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0072	3571	1	0	1	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0073	3571	1	0	0	1	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0074	3571	1	0	0	1	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0075	3571	1	1	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0076	3571	1	0	1	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0077	3571	1	1	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0078	3571	1	1	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0079	3571	1	1	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0080	3571	1	1	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0081	3571	1	1	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0082	3571	1	0	1	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0083	3571	1	0	1	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0084	3571	1	0	0	0	0	1	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0085	3571	1	0	1	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0086	3571	1	1	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0087	3571	1	1	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0088	3571	1	1	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0089	3571	1	0	1	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0090	3571	1	0	1	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0091	3571	1	0	0	1	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0092	3571	1	0	0	1	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0093	3571	1	1	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0094	3571	1	1	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0095	3571	1	0	0	1	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0096	3571	1	0	0	1	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0097	3571	1	1	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0098	3571	1	0	0	1	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0099	3571	1	0	1	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0100	3571	1	1	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0101	3571	1	0	0	0	1	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0102	3571	1	0	0	1	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0103	3571	1	0	1	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0104	3571	1	0	1	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0105	3571	1	0	0	0	0	1	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0106	3571	1	0	0	0	0	1	copy fasta	SVEP1	chr9	110360248	110584741