JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SVEP1_chr9_110360248_110584741	0/0	a0107	3571	1	0	0	1	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0108	3571	1	0	0	1	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0109	3571	1	0	0	0	0	1	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0110	225	1	0	0	1	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0111	3571	1	1	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	a0112	3571	1	1	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVIL_chr10_29452338_29639971	0/0	a0001	2214	81	25	25	18	3	10	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0002	2214	32	8	6	16	0	2	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0003	2214	32	3	3	19	2	5	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0004	2214	21	9	4	5	0	3	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0005	2214	14	0	10	0	1	3	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/1	a0006	2214	14	1	1	7	0	4	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0007	2214	12	1	2	9	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0008	2214	7	0	5	0	0	2	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0009	2214	6	4	0	0	0	2	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0010	2214	5	5	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0011	2214	4	3	1	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0012	2214	3	2	1	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0013	2214	3	1	1	0	0	1	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0014	2214	3	0	1	0	0	2	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0015	2214	3	3	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0016	2214	3	2	1	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0017	2214	3	2	1	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0018	2214	3	0	0	2	0	1	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0019	2214	2	2	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0020	2214	2	0	0	2	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0021	2214	2	0	0	2	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0022	2214	2	2	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0023	2214	2	1	1	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0024	2214	2	0	0	2	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0025	2214	2	0	0	0	1	1	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	1/0	a0026	2214	2	0	1	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0027	2214	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0028	2214	1	0	0	0	0	1	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0029	2214	1	0	0	1	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0030	2214	1	0	0	1	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0031	2214	1	0	1	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0032	2214	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0033	2214	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0034	2214	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0035	2214	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0036	2214	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0037	2214	1	0	0	0	0	1	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0038	2214	1	0	0	1	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0039	2214	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0040	2214	1	0	1	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0041	2214	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0042	2214	1	0	0	0	0	1	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0043	2214	1	0	0	1	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	a0044	2214	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971