JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BCAN_chr1_156637117_156664528	1/0	a0001	911	234	57	42	107	10	17	copy fasta	BCAN	chr1	156637117	156664528
BCAN_chr1_156637117_156664528	0/1	a0002	911	156	18	34	65	8	30	copy fasta	BCAN	chr1	156637117	156664528
BCAN_chr1_156637117_156664528	0/0	a0003	911	21	20	1	0	0	0	copy fasta	BCAN	chr1	156637117	156664528
BCAN_chr1_156637117_156664528	0/0	a0004	911	3	0	0	3	0	0	copy fasta	BCAN	chr1	156637117	156664528
BCAN_chr1_156637117_156664528	0/0	a0005	911	1	0	0	0	0	1	copy fasta	BCAN	chr1	156637117	156664528
BCAN_chr1_156637117_156664528	0/0	a0006	911	1	1	0	0	0	0	copy fasta	BCAN	chr1	156637117	156664528
BCAN_chr1_156637117_156664528	0/0	a0007	911	1	0	1	0	0	0	copy fasta	BCAN	chr1	156637117	156664528
BCAN_chr1_156637117_156664528	0/0	a0008	911	1	0	0	0	0	1	copy fasta	BCAN	chr1	156637117	156664528
BCAN_chr1_156637117_156664528	0/0	a0009	911	1	0	0	1	0	0	copy fasta	BCAN	chr1	156637117	156664528
BCAN_chr1_156637117_156664528	0/0	a0010	911	1	0	0	0	0	1	copy fasta	BCAN	chr1	156637117	156664528
BCAP29_chr7_107575246_107625478	1/1	a0001	241	398	90	76	182	16	32	copy fasta	BCAP29	chr7	107575246	107625478
BCAP31_chrX_153695492_153729387	1/1	a0001	246	265	75	42	108	6	32	copy fasta	BCAP31	chrX	153695492	153729387
BCAP31_chrX_153695492_153729387	0/0	a0002	42	1	0	0	1	0	0	copy fasta	BCAP31	chrX	153695492	153729387
BCAP31_chrX_153695492_153729387	0/0	a0003	246	1	1	0	0	0	0	copy fasta	BCAP31	chrX	153695492	153729387
BCAR1_chr16_75223181_75256624	0/0	a0001	870	204	21	45	95	12	31	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	1/1	a0002	870	139	44	21	60	3	9	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	a0003	870	11	8	3	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	a0004	870	7	7	0	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	a0005	870	5	5	0	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	a0006	870	4	0	0	0	0	4	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	a0007	870	2	2	0	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	a0008	870	2	0	2	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	a0009	870	2	0	0	2	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	a0010	870	2	2	0	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	a0011	870	1	0	1	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	a0012	870	1	0	0	0	0	1	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	a0013	870	1	1	0	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	a0014	870	1	1	0	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	a0015	870	1	0	0	0	1	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	a0016	870	1	0	0	0	0	1	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	a0017	870	1	1	0	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	a0018	870	1	0	0	1	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	a0019	870	1	0	0	1	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	a0020	870	1	0	0	1	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	a0021	870	1	0	0	1	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	a0022	870	1	0	0	1	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	a0023	870	1	0	0	1	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	a0024	870	1	0	0	1	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR3_chr1_93556741_93686837	1/1	a0001	825	166	50	34	60	5	15	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	a0002	825	12	12	0	0	0	0	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	a0003	825	6	5	1	0	0	0	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	a0004	825	5	3	2	0	0	0	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	a0005	825	2	2	0	0	0	0	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	a0006	825	2	2	0	0	0	0	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	a0007	825	1	0	0	1	0	0	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	a0008	825	1	1	0	0	0	0	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	a0009	825	1	1	0	0	0	0	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	a0010	825	1	0	0	0	1	0	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	a0011	825	1	0	0	0	0	1	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	a0012	825	1	1	0	0	0	0	copy fasta	BCAR3	chr1	93556741	93686837