JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SYBU_chr8_109568978_109649822	1/1	a0001	663	307	87	68	104	14	32	copy fasta	SYBU	chr8	109568978	109649822
SYBU_chr8_109568978_109649822	0/0	a0002	663	7	6	1	0	0	0	copy fasta	SYBU	chr8	109568978	109649822
SYBU_chr8_109568978_109649822	0/0	a0003	663	4	0	0	2	0	2	copy fasta	SYBU	chr8	109568978	109649822
SYBU_chr8_109568978_109649822	0/0	a0004	663	2	0	0	0	0	2	copy fasta	SYBU	chr8	109568978	109649822
SYBU_chr8_109568978_109649822	0/0	a0005	663	2	0	0	2	0	0	copy fasta	SYBU	chr8	109568978	109649822
SYBU_chr8_109568978_109649822	0/0	a0006	663	1	1	0	0	0	0	copy fasta	SYBU	chr8	109568978	109649822
SYBU_chr8_109568978_109649822	0/0	a0007	663	1	0	1	0	0	0	copy fasta	SYBU	chr8	109568978	109649822
SYCE1L_chr16_77194408_77218215	0/1	a0001	242	274	70	31	135	7	30	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1L_chr16_77194408_77218215	0/0	a0002	242	76	1	26	38	6	5	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1L_chr16_77194408_77218215	0/0	a0003	242	52	1	12	36	1	2	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1L_chr16_77194408_77218215	0/0	a0004	242	12	2	5	2	0	3	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1L_chr16_77194408_77218215	1/0	a0005	242	8	7	0	0	0	0	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1L_chr16_77194408_77218215	0/0	a0006	242	7	7	0	0	0	0	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1L_chr16_77194408_77218215	0/0	a0007	242	6	6	0	0	0	0	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1L_chr16_77194408_77218215	0/0	a0008	242	3	3	0	0	0	0	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1L_chr16_77194408_77218215	0/0	a0009	242	2	1	1	0	0	0	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1L_chr16_77194408_77218215	0/0	a0010	215	1	0	1	0	0	0	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1L_chr16_77194408_77218215	0/0	a0011	242	1	0	0	1	0	0	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1_chr10_133549847_133570583	1/1	a0001	351	282	69	49	127	5	30	copy fasta	SYCE1	chr10	133549847	133570583
SYCE1_chr10_133549847_133570583	0/0	a0002	351	85	0	14	62	3	6	copy fasta	SYCE1	chr10	133549847	133570583
SYCE1_chr10_133549847_133570583	0/0	a0003	351	15	14	1	0	0	0	copy fasta	SYCE1	chr10	133549847	133570583
SYCE1_chr10_133549847_133570583	0/0	a0004	351	1	1	0	0	0	0	copy fasta	SYCE1	chr10	133549847	133570583
SYCE1_chr10_133549847_133570583	0/0	a0005	351	1	0	0	1	0	0	copy fasta	SYCE1	chr10	133549847	133570583
SYCE2_chr19_12893786_12924293	1/1	a0001	218	375	93	78	148	16	38	copy fasta	SYCE2	chr19	12893786	12924293
SYCE2_chr19_12893786_12924293	0/0	a0002	218	2	0	0	2	0	0	copy fasta	SYCE2	chr19	12893786	12924293
SYCE2_chr19_12893786_12924293	0/0	a0003	218	1	1	0	0	0	0	copy fasta	SYCE2	chr19	12893786	12924293
SYCE3_chr22_50546112_50567919	1/1	a0001	88	380	78	69	177	11	43	copy fasta	SYCE3	chr22	50546112	50567919
SYCE3_chr22_50546112_50567919	0/0	a0002	88	33	19	5	3	1	5	copy fasta	SYCE3	chr22	50546112	50567919
SYCE3_chr22_50546112_50567919	0/0	a0003	88	1	1	0	0	0	0	copy fasta	SYCE3	chr22	50546112	50567919
SYCN_chr19_39197825_39209263	1/1	a0001	134	375	82	76	153	18	44	copy fasta	SYCN	chr19	39197825	39209263
SYCN_chr19_39197825_39209263	0/0	a0002	134	1	0	0	1	0	0	copy fasta	SYCN	chr19	39197825	39209263
SYCP1_chr1_114849863_115000370	1/0	a0001	976	300	78	53	128	14	26	copy fasta	SYCP1	chr1	114849863	115000370
SYCP1_chr1_114849863_115000370	0/0	a0002	976	6	6	0	0	0	0	copy fasta	SYCP1	chr1	114849863	115000370
SYCP1_chr1_114849863_115000370	0/0	a0003	976	2	0	2	0	0	0	copy fasta	SYCP1	chr1	114849863	115000370
SYCP1_chr1_114849863_115000370	0/1	a0004	976	1	0	0	0	0	0	copy fasta	SYCP1	chr1	114849863	115000370
SYCP1_chr1_114849863_115000370	0/0	a0005	976	1	0	1	0	0	0	copy fasta	SYCP1	chr1	114849863	115000370
SYCP1_chr1_114849863_115000370	0/0	a0006	976	1	0	0	1	0	0	copy fasta	SYCP1	chr1	114849863	115000370
SYCP1_chr1_114849863_115000370	0/0	a0007	976	1	0	0	1	0	0	copy fasta	SYCP1	chr1	114849863	115000370
SYCP2L_chr6_10882052_10979309	0/1	a0001	812	223	46	48	90	8	30	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	a0002	812	53	27	3	18	4	1	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	a0003	812	24	0	1	22	0	1	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	1/0	a0004	812	17	12	1	3	0	0	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	a0005	812	12	0	3	5	2	2	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	a0006	812	4	0	0	4	0	0	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	a0007	812	4	3	1	0	0	0	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	a0008	812	3	2	0	1	0	0	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	a0009	812	3	0	2	0	0	1	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	a0010	812	3	0	0	3	0	0	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	a0011	812	2	2	0	0	0	0	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	a0012	812	1	1	0	0	0	0	copy fasta	SYCP2L	chr6	10882052	10979309