JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SYCP2L_chr6_10882052_10979309	0/0	a0013	812	1	1	0	0	0	0	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	a0014	812	1	1	0	0	0	0	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	a0015	812	1	0	0	0	0	1	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	a0016	812	1	1	0	0	0	0	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	a0017	812	1	0	1	0	0	0	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2_chr20_59858571_59938637	1/1	a0001	1530	247	67	41	109	11	17	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	a0002	1530	7	6	1	0	0	0	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	a0003	1530	5	0	5	0	0	0	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	a0004	1530	3	0	3	0	0	0	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	a0005	1530	3	3	0	0	0	0	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	a0006	1530	2	2	0	0	0	0	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	a0007	1530	2	0	0	0	1	1	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	a0008	1530	1	0	1	0	0	0	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	a0009	1530	1	0	0	1	0	0	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	a0010	1530	1	0	0	0	0	1	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	a0011	1530	1	0	0	0	0	1	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	a0012	1530	1	0	1	0	0	0	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	a0013	1530	1	0	0	1	0	0	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	a0014	1530	1	0	0	1	0	0	copy fasta	SYCP2	chr20	59858571	59938637
SYCP3_chr12_101723648_101744462	1/1	a0001	236	426	96	72	202	18	36	copy fasta	SYCP3	chr12	101723648	101744462
SYDE1_chr19_15102401_15119974	1/1	a0001	735	302	88	56	112	14	30	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	a0002	735	114	6	24	63	2	19	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	a0003	735	2	0	0	2	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	a0004	735	1	1	0	0	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	a0005	735	1	0	0	1	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	a0006	735	1	0	0	0	0	1	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	a0007	9	1	1	0	0	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE2_chr1_85151889_85206016	0/1	a0001	1194	147	27	23	57	14	25	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	a0002	1194	109	6	24	67	1	11	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	a0003	1194	37	1	7	26	1	2	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	a0004	1194	20	6	12	0	2	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	a0005	1194	12	12	0	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	a0006	1194	11	0	4	7	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	a0007	1194	10	10	0	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	a0008	1194	10	10	0	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	a0009	1194	5	2	3	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	a0010	1194	5	0	0	5	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	a0011	1194	5	5	0	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	a0012	1194	3	0	0	3	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	a0013	1194	2	0	0	2	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	a0014	1194	2	2	0	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	a0015	1194	2	2	0	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	a0016	1194	2	0	0	2	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	a0017	1194	2	2	0	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	a0018	1194	2	0	0	2	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	a0019	1194	2	2	0	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	a0020	1194	1	0	0	1	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	a0021	1194	1	0	0	1	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	a0022	1194	1	0	0	1	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	a0023	1194	1	0	1	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016