JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SYDE2_chr1_85151889_85206016	0/0	a0024	1194	1	0	1	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	a0025	865	1	0	1	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	1/0	a0026	1194	1	0	0	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	a0027	1194	1	0	0	0	0	1	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	a0028	1194	1	1	0	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	a0029	1194	1	0	0	0	0	1	copy fasta	SYDE2	chr1	85151889	85206016
SYF2_chr1_25217276_25237502	1/1	a0001	243	282	91	45	95	13	36	copy fasta	SYF2	chr1	25217276	25237502
SYF2_chr1_25217276_25237502	0/0	a0002	243	11	0	8	0	1	2	copy fasta	SYF2	chr1	25217276	25237502
SYF2_chr1_25217276_25237502	0/0	a0003	243	4	3	1	0	0	0	copy fasta	SYF2	chr1	25217276	25237502
SYF2_chr1_25217276_25237502	0/0	a0004	243	2	0	2	0	0	0	copy fasta	SYF2	chr1	25217276	25237502
SYF2_chr1_25217276_25237502	0/0	a0005	243	1	0	0	1	0	0	copy fasta	SYF2	chr1	25217276	25237502
SYK_chr9_90796819_90903549	1/1	a0001	635	372	89	72	163	10	36	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	a0002	635	3	3	0	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	a0003	635	1	0	0	1	0	0	copy fasta	SYK	chr9	90796819	90903549
SYMPK_chr19_45810410_45868147	1/1	a0001	1274	384	84	73	169	18	38	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	a0002	1274	3	0	3	0	0	0	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	a0003	1274	1	0	1	0	0	0	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	a0004	1274	1	0	1	0	0	0	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	a0005	1274	1	1	0	0	0	0	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	a0006	1274	1	1	0	0	0	0	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	a0007	1274	1	0	0	1	0	0	copy fasta	SYMPK	chr19	45810410	45868147
SYN1_chrX_47566901_47624857	1/1	a0001	705	264	71	51	104	11	25	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	a0002	682	3	0	1	2	0	0	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	a0003	682	2	1	0	1	0	0	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	a0004	705	2	2	0	0	0	0	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	a0005	700	1	0	0	1	0	0	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	a0006	706	1	0	0	1	0	0	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	a0007	682	1	1	0	0	0	0	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	a0008	704	1	1	0	0	0	0	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	a0009	705	1	1	0	0	0	0	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	a0010	682	1	0	1	0	0	0	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	a0011	666	1	0	0	0	0	1	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	a0012	705	1	0	0	1	0	0	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	a0013	705	1	1	0	0	0	0	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	a0014	705	1	0	1	0	0	0	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	a0015	171	1	0	0	1	0	0	copy fasta	SYN1	chrX	47566901	47624857
SYN2_chr3_11999388_12197032	0/0	a0001	586	118	41	19	53	2	3	copy fasta	SYN2	chr3	11999388	12197032
SYN2_chr3_11999388_12197032	0/0	a0002	582	100	21	19	47	3	10	copy fasta	SYN2	chr3	11999388	12197032
SYN2_chr3_11999388_12197032	0/0	a0003	586	21	15	2	3	0	1	copy fasta	SYN2	chr3	11999388	12197032
SYN2_chr3_11999388_12197032	0/0	a0004	590	9	1	3	0	1	4	copy fasta	SYN2	chr3	11999388	12197032
SYN2_chr3_11999388_12197032	0/1	a0005	586	8	0	2	4	0	1	copy fasta	SYN2	chr3	11999388	12197032
SYN2_chr3_11999388_12197032	0/0	a0006	586	3	3	0	0	0	0	copy fasta	SYN2	chr3	11999388	12197032
SYN2_chr3_11999388_12197032	1/0	a0007	582	2	0	0	0	0	1	copy fasta	SYN2	chr3	11999388	12197032
SYN2_chr3_11999388_12197032	0/0	a0008	586	1	1	0	0	0	0	copy fasta	SYN2	chr3	11999388	12197032
SYN2_chr3_11999388_12197032	0/0	a0009	578	1	0	1	0	0	0	copy fasta	SYN2	chr3	11999388	12197032
SYN2_chr3_11999388_12197032	0/0	a0010	586	1	0	0	1	0	0	copy fasta	SYN2	chr3	11999388	12197032
SYN3_chr22_32502820_33063381	0/0	a0001	580	157	55	37	34	6	25	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	a0002	580	27	21	1	0	0	5	copy fasta	SYN3	chr22	32502820	33063381
SYNCRIP_chr6_85608976_85647886	1/1	a0001	623	361	84	48	179	14	34	copy fasta	SYNCRIP	chr6	85608976	85647886
SYNCRIP_chr6_85608976_85647886	0/0	a0002	623	2	0	2	0	0	0	copy fasta	SYNCRIP	chr6	85608976	85647886