JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SYNCRIP_chr6_85608976_85647886	0/0	a0003	623	1	0	0	1	0	0	copy fasta	SYNCRIP	chr6	85608976	85647886
SYNC_chr1_32674906_32707770	0/1	a0001	482	242	74	39	82	12	34	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	a0002	482	39	0	14	23	0	2	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	1/0	a0003	482	22	13	3	5	0	0	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	a0004	482	8	5	3	0	0	0	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	a0005	482	4	3	1	0	0	0	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	a0006	482	1	0	0	1	0	0	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	a0007	482	1	1	0	0	0	0	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	a0008	482	1	0	0	1	0	0	copy fasta	SYNC	chr1	32674906	32707770
SYNDIG1L_chr14_74400899_74431210	1/1	a0001	238	356	81	56	170	15	32	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	0/0	a0002	238	42	7	12	16	1	6	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	0/0	a0003	238	4	4	0	0	0	0	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	0/0	a0004	238	1	0	0	0	0	1	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	0/0	a0005	238	1	0	0	0	0	1	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1_chr20_24464629_24671616	1/1	a0001	258	264	83	48	86	11	34	copy fasta	SYNDIG1	chr20	24464629	24671616
SYNDIG1_chr20_24464629_24671616	0/0	a0002	258	3	0	0	0	1	2	copy fasta	SYNDIG1	chr20	24464629	24671616
SYNDIG1_chr20_24464629_24671616	0/0	a0003	258	2	2	0	0	0	0	copy fasta	SYNDIG1	chr20	24464629	24671616
SYNDIG1_chr20_24464629_24671616	0/0	a0004	258	1	1	0	0	0	0	copy fasta	SYNDIG1	chr20	24464629	24671616
SYNE1_chr6_152116687_152173312	0/1	a0001	975	162	41	28	74	6	12	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	a0002	975	105	11	25	52	4	13	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	a0003	975	33	28	3	0	0	2	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	a0004	975	25	1	1	17	3	3	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	a0005	975	23	0	0	21	0	2	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	a0006	975	18	4	1	10	0	3	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	a0007	975	17	0	4	10	0	3	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	1/0	a0008	975	16	2	3	4	1	5	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	a0009	975	7	0	0	5	1	1	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	a0010	975	6	0	5	0	0	1	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	a0011	975	6	4	2	0	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	a0012	975	5	0	1	4	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	a0013	975	4	1	1	0	2	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	a0014	975	1	0	0	1	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	a0015	975	1	0	1	0	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	a0016	975	1	0	1	0	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	a0017	975	1	1	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	a0018	975	1	0	0	0	1	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	a0019	975	1	1	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	a0020	975	1	1	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	a0021	975	1	1	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	a0022	975	1	0	0	0	0	1	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152642362	0/0	a0001	8797	7	1	1	5	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	a0002	8797	5	0	1	4	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	a0003	8797	5	0	2	2	0	1	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	a0004	8797	4	2	0	2	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	a0005	8797	3	0	0	2	0	1	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	a0006	8797	3	0	2	0	0	1	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	a0007	8797	3	0	1	2	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	a0008	8797	3	0	0	1	0	2	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	a0009	8797	3	3	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	a0010	8797	3	1	1	0	0	1	copy fasta	SYNE1	chr6	152116687	152642362