JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SYNE1_chr6_152116687_152642362	0/0	a0111	8797	1	0	0	1	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	a0112	8797	1	0	0	1	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	a0113	8797	1	0	0	1	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	a0114	8797	1	0	0	1	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	a0115	8797	1	0	0	1	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	a0116	8797	1	0	0	0	0	1	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	a0117	8797	1	0	1	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	a0118	8797	1	1	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	a0119	8797	1	1	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	a0120	8797	1	1	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	a0121	8797	1	1	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	a0122	8797	1	0	0	1	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	a0123	8797	1	1	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	a0124	8797	1	0	1	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	a0125	8797	1	1	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	a0126	8797	1	1	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	a0127	8797	1	1	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	a0128	8797	1	1	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	a0129	8797	1	0	1	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	a0130	8797	1	1	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	a0131	8797	1	0	1	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	a0132	8797	1	0	1	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	a0133	8797	1	0	0	1	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE2_chr14_63848004_64231433	0/0	a0001	6907	20	2	4	12	0	2	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0002	6907	15	0	6	7	0	2	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0003	6907	11	2	1	6	1	1	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0004	6907	5	0	5	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0005	6907	4	3	1	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0006	6907	3	3	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0007	6907	3	3	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0008	6907	3	2	0	1	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0009	6907	3	0	0	3	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0010	6907	3	3	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0011	6907	3	0	0	0	0	3	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0012	6907	3	0	0	2	0	1	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0013	6907	2	2	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0014	6907	2	2	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0015	6907	2	2	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0016	6907	2	1	1	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0017	6906	2	2	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0018	6907	2	0	0	2	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0019	6907	2	0	0	1	0	1	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0020	6907	2	0	0	2	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0021	6907	2	2	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0022	6907	2	1	1	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0023	6907	2	0	0	2	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0024	6907	2	2	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0025	6907	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0026	6907	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0027	6907	1	0	0	1	0	0	copy fasta	SYNE2	chr14	63848004	64231433