JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SYNE2_chr14_63848004_64231433	0/0	a0028	6907	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0029	6907	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0030	6907	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0031	6907	1	0	1	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0032	6907	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0033	6907	1	0	0	1	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0034	6907	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	1/0	a0035	6907	1	0	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0036	6907	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/1	a0037	6907	1	0	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0038	6907	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0039	6907	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0040	6907	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0041	6907	1	0	1	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0042	6907	1	0	0	1	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0043	6907	1	0	0	1	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0044	6907	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0045	6907	1	0	0	0	0	1	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0046	6907	1	0	0	0	0	1	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0047	6907	1	0	0	1	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0048	6907	1	0	0	0	0	1	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0049	6907	1	0	0	0	0	1	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0050	6907	1	0	0	1	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0051	6907	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0052	6907	1	0	1	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0053	6907	1	0	0	1	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0054	6846	1	0	0	1	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0055	6907	1	0	0	1	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0056	6907	1	0	0	0	0	1	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0057	6907	1	0	0	0	0	1	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0058	6907	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0059	6907	1	0	1	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0060	6907	1	0	0	0	0	1	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0061	6907	1	0	0	0	1	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0062	6907	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0063	6907	1	0	0	0	0	1	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0064	6907	1	0	0	1	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0065	6907	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0066	6907	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0067	6907	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0068	6907	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0069	6907	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0070	6907	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0071	6907	1	0	0	1	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0072	6907	1	0	0	1	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0073	6907	1	0	1	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	a0074	6907	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE3_chr14_95402266_95521650	0/0	a0001	975	78	26	20	21	4	7	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	1/0	a0002	975	67	18	11	27	2	8	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	a0003	975	60	9	16	28	3	4	copy fasta	SYNE3	chr14	95402266	95521650