JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SYNE3_chr14_95402266_95521650	0/0	a0004	975	56	3	12	30	2	9	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	a0005	974	22	0	2	13	0	7	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	a0006	974	18	4	3	10	0	1	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/1	a0007	974	14	4	2	5	0	2	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	a0008	974	11	0	0	11	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	a0009	975	7	2	1	1	1	2	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	a0010	975	6	4	2	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	a0011	975	5	5	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	a0012	975	4	4	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	a0013	975	4	4	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	a0014	975	3	0	2	0	1	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	a0015	974	3	0	2	0	0	1	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	a0016	975	3	3	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	a0017	975	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	a0018	975	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	a0019	975	1	0	0	1	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	a0020	975	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	a0021	975	1	0	0	0	1	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	a0022	974	1	0	0	1	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	a0023	975	1	0	1	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	a0024	975	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	a0025	975	1	0	0	1	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	a0026	975	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	a0027	975	1	0	1	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	a0028	975	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	a0029	974	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	a0030	975	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	a0031	975	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	a0032	975	1	0	0	1	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	a0033	975	1	0	0	1	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	a0034	975	1	0	0	0	0	1	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	a0035	974	1	0	0	1	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	a0036	975	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	a0037	975	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	a0038	975	1	0	1	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	a0039	975	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE4_chr19_35998307_36013813	0/1	a0001	404	312	78	75	107	12	39	copy fasta	SYNE4	chr19	35998307	36013813
SYNE4_chr19_35998307_36013813	1/0	a0002	404	38	0	5	27	0	5	copy fasta	SYNE4	chr19	35998307	36013813
SYNE4_chr19_35998307_36013813	0/0	a0003	404	9	0	0	9	0	0	copy fasta	SYNE4	chr19	35998307	36013813
SYNE4_chr19_35998307_36013813	0/0	a0004	404	9	9	0	0	0	0	copy fasta	SYNE4	chr19	35998307	36013813
SYNE4_chr19_35998307_36013813	0/0	a0005	404	3	3	0	0	0	0	copy fasta	SYNE4	chr19	35998307	36013813
SYNE4_chr19_35998307_36013813	0/0	a0006	404	1	0	0	1	0	0	copy fasta	SYNE4	chr19	35998307	36013813
SYNE4_chr19_35998307_36013813	0/0	a0007	404	1	0	0	1	0	0	copy fasta	SYNE4	chr19	35998307	36013813
SYNE4_chr19_35998307_36013813	0/0	a0008	404	1	1	0	0	0	0	copy fasta	SYNE4	chr19	35998307	36013813
SYNE4_chr19_35998307_36013813	0/0	a0009	404	1	1	0	0	0	0	copy fasta	SYNE4	chr19	35998307	36013813
SYNE4_chr19_35998307_36013813	0/0	a0010	109	1	0	0	1	0	0	copy fasta	SYNE4	chr19	35998307	36013813
SYNGAP1_chr6_33415065_33458689	0/1	a0001	1343	296	89	62	99	15	30	copy fasta	SYNGAP1	chr6	33415065	33458689
SYNGAP1_chr6_33415065_33458689	0/0	a0002	1343	9	0	1	7	1	0	copy fasta	SYNGAP1	chr6	33415065	33458689
SYNGAP1_chr6_33415065_33458689	0/0	a0003	1343	1	1	0	0	0	0	copy fasta	SYNGAP1	chr6	33415065	33458689
SYNGAP1_chr6_33415065_33458689	0/0	a0004	1343	1	0	1	0	0	0	copy fasta	SYNGAP1	chr6	33415065	33458689