JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SYNGR1_chr22_39344991_39390575	0/1	a0001	234	261	86	51	78	11	34	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	1/0	a0002	233	36	10	15	0	1	9	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	a0003	233	2	0	0	0	2	0	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	a0004	234	1	0	0	0	0	1	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR2_chr17_78163581_78177720	1/1	a0001	224	413	86	78	181	16	50	copy fasta	SYNGR2	chr17	78163581	78177720
SYNGR2_chr17_78163581_78177720	0/0	a0002	224	22	0	0	22	0	0	copy fasta	SYNGR2	chr17	78163581	78177720
SYNGR2_chr17_78163581_78177720	0/0	a0003	224	14	12	2	0	0	0	copy fasta	SYNGR2	chr17	78163581	78177720
SYNGR2_chr17_78163581_78177720	0/0	a0004	224	1	0	0	1	0	0	copy fasta	SYNGR2	chr17	78163581	78177720
SYNGR3_chr16_1984970_1999275	1/1	a0001	229	425	93	82	180	18	50	copy fasta	SYNGR3	chr16	1984970	1999275
SYNGR3_chr16_1984970_1999275	0/0	a0002	229	1	0	0	1	0	0	copy fasta	SYNGR3	chr16	1984970	1999275
SYNGR3_chr16_1984970_1999275	0/0	a0003	229	1	1	0	0	0	0	copy fasta	SYNGR3	chr16	1984970	1999275
SYNGR3_chr16_1984970_1999275	0/0	a0004	229	1	0	0	1	0	0	copy fasta	SYNGR3	chr16	1984970	1999275
SYNGR4_chr19_48359367_48381377	1/1	a0001	234	378	91	72	164	10	39	copy fasta	SYNGR4	chr19	48359367	48381377
SYNGR4_chr19_48359367_48381377	0/0	a0002	234	36	3	4	23	2	4	copy fasta	SYNGR4	chr19	48359367	48381377
SYNGR4_chr19_48359367_48381377	0/0	a0003	234	6	4	2	0	0	0	copy fasta	SYNGR4	chr19	48359367	48381377
SYNGR4_chr19_48359367_48381377	0/0	a0004	234	2	0	0	2	0	0	copy fasta	SYNGR4	chr19	48359367	48381377
SYNGR4_chr19_48359367_48381377	0/0	a0005	234	1	0	0	1	0	0	copy fasta	SYNGR4	chr19	48359367	48381377
SYNGR4_chr19_48359367_48381377	0/0	a0006	234	1	0	0	0	0	1	copy fasta	SYNGR4	chr19	48359367	48381377
SYNGR4_chr19_48359367_48381377	0/0	a0007	234	1	1	0	0	0	0	copy fasta	SYNGR4	chr19	48359367	48381377
SYNGR4_chr19_48359367_48381377	0/0	a0008	234	1	1	0	0	0	0	copy fasta	SYNGR4	chr19	48359367	48381377
SYNGR4_chr19_48359367_48381377	0/0	a0009	234	1	0	0	1	0	0	copy fasta	SYNGR4	chr19	48359367	48381377
SYNGR4_chr19_48359367_48381377	0/0	a0010	234	1	0	0	0	0	1	copy fasta	SYNGR4	chr19	48359367	48381377
SYNGR4_chr19_48359367_48381377	0/0	a0011	234	1	0	0	1	0	0	copy fasta	SYNGR4	chr19	48359367	48381377
SYNGR4_chr19_48359367_48381377	0/0	a0012	234	1	0	0	0	0	1	copy fasta	SYNGR4	chr19	48359367	48381377
SYNJ1_chr21_32623763_32733013	1/1	a0001	1311	203	50	38	87	6	20	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	a0002	1311	132	24	18	70	3	17	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	a0003	1311	6	6	0	0	0	0	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	a0004	1311	2	1	0	0	1	0	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	a0005	1311	1	0	0	0	0	1	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	a0006	1311	1	0	0	1	0	0	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	a0007	1311	1	1	0	0	0	0	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ2BP_chr14_70361499_70422090	1/1	a0001	145	362	82	60	170	8	40	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	a0002	145	1	0	1	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	a0003	145	1	0	1	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2_chr6_157976863_158104176	0/1	a0001	1496	158	42	25	68	8	14	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	1/0	a0002	1496	124	25	27	45	6	20	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	a0003	1496	5	4	1	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	a0004	1496	5	5	0	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	a0005	1496	3	3	0	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	a0006	1496	3	0	0	3	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	a0007	1496	2	2	0	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	a0008	1496	1	0	1	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	a0009	1496	1	0	0	1	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	a0010	1496	1	0	0	1	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	a0011	1496	1	1	0	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	a0012	1496	1	0	0	0	0	1	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	a0013	1496	1	0	0	1	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	a0014	1496	1	0	0	1	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	a0015	1496	1	1	0	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	a0016	1496	1	0	0	0	0	1	copy fasta	SYNJ2	chr6	157976863	158104176