JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SYNJ2_chr6_157976863_158104176	0/0	a0017	1496	1	1	0	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	a0018	1496	1	0	0	1	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	a0019	1496	1	0	0	1	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNM_chr15_99100080_99140593	0/0	a0001	1565	120	27	20	49	6	18	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	1/0	a0002	1565	91	22	14	43	3	8	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0003	1565	66	5	4	50	2	5	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0004	1565	26	4	5	12	0	5	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0005	1565	15	3	2	7	1	2	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0006	1565	10	7	2	1	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/1	a0007	1565	8	0	7	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0008	1565	8	0	2	3	2	1	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0009	1565	7	0	4	0	0	3	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0010	1565	6	3	1	0	0	2	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0011	1565	6	6	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0012	1565	5	0	0	5	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0013	1565	5	0	0	5	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0014	1565	5	0	0	5	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0015	1565	4	4	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0016	1565	3	3	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0017	1565	3	3	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0018	1565	2	2	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0019	1565	2	0	0	2	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0020	1565	2	2	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0021	1565	1	0	0	0	0	1	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0022	1565	1	0	0	1	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0023	1565	1	1	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0024	1565	1	1	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0025	1565	1	1	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0026	1565	1	1	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0027	1565	1	0	0	1	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0028	1565	1	1	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0029	1565	1	0	0	1	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0030	1565	1	1	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0031	1565	1	0	0	1	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0032	1565	1	0	0	1	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0033	1565	1	1	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0034	1565	1	0	0	1	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0035	1565	1	0	1	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0036	1565	1	0	1	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0037	1565	1	0	1	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0038	1565	1	0	1	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0039	1565	1	0	0	1	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0040	1565	1	0	0	1	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0041	1565	1	0	1	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0042	1565	1	0	0	0	0	1	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0043	1565	1	0	1	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0044	1565	1	1	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0045	1572	1	0	1	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	a0046	1565	1	1	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNPO2L_chr10_73639886_73661029	1/1	a0001	977	259	49	43	123	9	33	copy fasta	SYNPO2L	chr10	73639886	73661029