JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SYNPO2L_chr10_73639886_73661029	0/0	a0002	977	61	15	4	34	0	8	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	a0003	977	34	25	6	3	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	a0004	977	13	1	1	11	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	a0005	977	6	4	2	0	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	a0006	977	2	2	0	0	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	a0007	977	1	0	0	1	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	a0008	977	1	1	0	0	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	a0009	977	1	1	0	0	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	a0010	977	1	0	0	0	1	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	a0011	977	1	0	0	0	0	1	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	a0012	977	1	0	0	1	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	a0013	977	1	0	0	1	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2_chr4_118883854_119066247	0/0	a0001	1260	81	12	19	41	2	7	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	a0002	1261	75	23	15	27	0	10	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/1	a0003	1261	63	9	15	32	2	4	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	1/0	a0004	1261	31	5	2	15	0	8	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	a0005	1260	13	11	2	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	a0006	1260	8	0	1	7	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	a0007	1260	6	6	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	a0008	1260	5	0	2	0	1	2	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	a0009	1261	4	4	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	a0010	1261	4	4	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	a0011	1261	3	3	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	a0012	1261	2	2	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	a0013	1261	2	0	0	2	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	a0014	1261	1	1	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	a0015	1261	1	0	0	0	1	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	a0016	1261	1	0	0	1	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	a0017	1261	1	1	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	a0018	1261	1	0	0	1	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	a0019	1261	1	1	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	a0020	1261	1	0	0	0	0	1	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	a0021	1261	1	1	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	a0022	1260	1	0	0	1	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	a0023	1260	1	0	1	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	a0024	1260	1	1	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	a0025	1260	1	0	1	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	a0026	1261	1	0	0	1	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO_chr5_150635660_150664207	1/1	a0001	903	325	74	51	148	12	38	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	a0002	899	23	4	1	18	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	a0003	905	11	8	1	2	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	a0004	907	7	5	1	0	0	1	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	a0005	901	6	4	2	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	a0006	903	4	0	0	4	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	a0007	907	2	2	0	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	a0008	903	2	0	0	2	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	a0009	903	2	0	1	0	0	1	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	a0010	901	1	0	1	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	a0011	903	1	0	0	1	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	a0012	909	1	0	1	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207