JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SYNPO_chr5_150635660_150664207	0/0	a0013	907	1	1	0	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	a0014	897	1	0	0	1	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	a0015	903	1	1	0	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	a0016	903	1	0	1	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	a0017	903	1	1	0	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPR_chr3_63273308_63621924	0/0	a0001	285	243	88	40	79	8	28	copy fasta	SYNPR	chr3	63273308	63621924
SYNPR_chr3_63273308_63621924	0/0	a0002	285	3	0	0	3	0	0	copy fasta	SYNPR	chr3	63273308	63621924
SYNRG_chr17_37509807_37614418	0/0	a0001	1314	206	62	32	87	6	19	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	a0002	1314	80	11	20	36	4	9	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/1	a0003	1314	49	7	12	19	4	6	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	a0004	1314	2	1	1	0	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	a0005	1314	2	2	0	0	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	a0006	1314	2	0	0	0	0	2	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	a0007	1314	1	0	1	0	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	a0008	1314	1	1	0	0	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	a0009	1314	1	0	0	1	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	a0010	1314	1	0	1	0	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	a0011	1314	1	0	0	1	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	a0012	1314	1	0	0	1	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	a0013	1314	1	0	0	1	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	a0014	1314	1	0	1	0	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYPL1_chr7_106085505_106117312	1/1	a0001	241	398	94	62	186	14	40	copy fasta	SYPL1	chr7	106085505	106117312
SYPL2_chr1_109461546_109487134	1/1	a0001	272	269	78	56	78	18	37	copy fasta	SYPL2	chr1	109461546	109487134
SYPL2_chr1_109461546_109487134	0/0	a0002	272	13	13	0	0	0	0	copy fasta	SYPL2	chr1	109461546	109487134
SYPL2_chr1_109461546_109487134	0/0	a0003	272	7	3	0	0	0	4	copy fasta	SYPL2	chr1	109461546	109487134
SYPL2_chr1_109461546_109487134	0/0	a0004	272	3	3	0	0	0	0	copy fasta	SYPL2	chr1	109461546	109487134
SYPL2_chr1_109461546_109487134	0/0	a0005	272	1	1	0	0	0	0	copy fasta	SYPL2	chr1	109461546	109487134
SYPL2_chr1_109461546_109487134	0/0	a0006	272	1	0	0	0	0	1	copy fasta	SYPL2	chr1	109461546	109487134
SYP_chrX_49182815_49205193	1/1	a0001	313	297	72	50	129	11	33	copy fasta	SYP	chrX	49182815	49205193
SYP_chrX_49182815_49205193	0/0	a0002	313	1	0	0	0	0	1	copy fasta	SYP	chrX	49182815	49205193
SYS1_chr20_45358156_45374209	1/1	a0001	156	385	95	66	174	10	38	copy fasta	SYS1	chr20	45358156	45374209
SYS1_chr20_45358156_45374209	0/0	a0002	156	1	1	0	0	0	0	copy fasta	SYS1	chr20	45358156	45374209
SYT10_chr12_33369238_33444819	1/1	a0001	523	312	85	67	125	6	27	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	a0002	523	2	0	0	2	0	0	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	a0003	523	2	2	0	0	0	0	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	a0004	523	2	1	1	0	0	0	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	a0005	523	1	0	0	1	0	0	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	a0006	523	1	0	0	0	0	1	copy fasta	SYT10	chr12	33369238	33444819
SYT11_chr1_155854567_155890199	0/1	a0001	431	296	78	56	113	14	34	copy fasta	SYT11	chr1	155854567	155890199
SYT11_chr1_155854567_155890199	1/0	a0002	431	17	16	0	0	0	0	copy fasta	SYT11	chr1	155854567	155890199
SYT11_chr1_155854567_155890199	0/0	a0003	431	1	0	0	1	0	0	copy fasta	SYT11	chr1	155854567	155890199
SYT12_chr11_67018134_67055863	1/1	a0001	421	259	71	40	104	12	30	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	a0002	421	30	12	2	16	0	0	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	a0003	421	1	1	0	0	0	0	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	a0004	421	1	0	0	1	0	0	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	a0005	421	1	0	0	1	0	0	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	a0006	421	1	1	0	0	0	0	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	a0007	421	1	1	0	0	0	0	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	a0008	421	1	0	0	0	0	1	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	a0009	421	1	0	0	0	0	1	copy fasta	SYT12	chr11	67018134	67055863