JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SYT8_chr11_1829990_1842521	0/0	a0023	387	1	0	1	0	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	a0024	387	1	0	0	0	0	1	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	a0025	387	1	0	0	1	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT9_chr11_7246904_7474043	1/1	a0001	491	247	78	48	79	10	30	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	a0002	491	14	0	0	14	0	0	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	a0003	491	7	6	1	0	0	0	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	a0004	491	3	0	1	0	2	0	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	a0005	491	1	0	0	1	0	0	copy fasta	SYT9	chr11	7246904	7474043
SYTL1_chr1_27337022_27358932	1/0	a0001	562	211	56	36	100	8	10	copy fasta	SYTL1	chr1	27337022	27358932
SYTL1_chr1_27337022_27358932	0/1	a0002	562	156	36	33	49	10	27	copy fasta	SYTL1	chr1	27337022	27358932
SYTL1_chr1_27337022_27358932	0/0	a0003	562	6	0	5	0	0	1	copy fasta	SYTL1	chr1	27337022	27358932
SYTL1_chr1_27337022_27358932	0/0	a0004	562	2	2	0	0	0	0	copy fasta	SYTL1	chr1	27337022	27358932
SYTL1_chr1_27337022_27358932	0/0	a0005	562	1	0	0	1	0	0	copy fasta	SYTL1	chr1	27337022	27358932
SYTL1_chr1_27337022_27358932	0/0	a0006	545	1	0	0	1	0	0	copy fasta	SYTL1	chr1	27337022	27358932
SYTL1_chr1_27337022_27358932	0/0	a0007	562	1	0	0	1	0	0	copy fasta	SYTL1	chr1	27337022	27358932
SYTL2_chr11_85689229_85816141	0/1	a0001	2239	139	36	19	66	6	11	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	1/0	a0002	2239	127	11	16	75	6	18	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	a0003	2239	12	9	3	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	a0004	2239	12	0	5	6	0	1	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	a0005	2239	9	8	1	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	a0006	2239	8	0	4	3	1	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	a0007	2239	6	4	2	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	a0008	2239	6	0	0	6	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	a0009	2239	5	5	0	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	a0010	2239	5	1	1	0	0	3	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	a0011	2239	3	0	0	3	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	a0012	2239	2	2	0	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	a0013	2239	2	0	1	0	1	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	a0014	2239	2	2	0	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	a0015	2239	2	1	1	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	a0016	2239	2	2	0	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	a0017	2239	2	2	0	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	a0018	2239	2	0	0	0	0	2	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	a0019	2239	1	0	0	1	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	a0020	2239	1	1	0	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	a0021	2239	1	0	1	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	a0022	681	1	0	0	1	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	a0023	2239	1	0	0	1	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	a0024	2239	1	0	0	1	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	a0025	2239	1	0	1	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	a0026	2239	1	0	0	1	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	a0027	2239	1	0	1	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	a0028	2239	1	1	0	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	a0029	2239	1	0	1	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	a0030	2239	1	0	0	1	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	a0031	2239	1	0	0	1	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	a0032	2239	1	1	0	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	a0033	2239	1	1	0	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	a0034	2239	1	1	0	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	a0035	2239	1	1	0	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141