JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SYTL2_chr11_85689229_85816141	0/0	a0036	2239	1	0	1	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	a0037	2239	1	0	0	0	0	1	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	a0038	2239	1	1	0	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL3_chr6_158645054_158769871	0/1	a0001	610	125	39	35	22	3	25	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	a0002	610	104	20	24	44	5	11	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	1/0	a0003	610	27	16	0	5	0	5	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	a0004	610	25	10	9	4	0	2	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	a0005	610	4	4	0	0	0	0	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	a0006	610	2	0	0	0	0	2	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	a0007	610	2	2	0	0	0	0	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	a0008	610	1	0	0	1	0	0	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	a0009	590	1	0	0	0	0	1	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	a0010	610	1	1	0	0	0	0	copy fasta	SYTL3	chr6	158645054	158769871
SYTL4_chrX_100669491_100737121	0/1	a0001	671	262	53	50	116	10	32	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	1/0	a0002	671	20	18	0	0	1	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	a0003	671	1	1	0	0	0	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	a0004	671	1	0	1	0	0	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	a0005	671	1	0	0	1	0	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL5_chrX_38001553_38133816	1/1	a0001	730	211	53	33	91	7	25	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	a0002	730	25	10	9	1	0	5	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	a0003	730	8	5	2	0	0	1	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	a0004	730	1	0	0	1	0	0	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	a0005	730	1	0	0	0	0	1	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	a0006	730	1	0	0	1	0	0	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	a0007	729	1	0	0	1	0	0	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	a0008	608	1	0	0	1	0	0	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	a0009	730	1	0	0	1	0	0	copy fasta	SYTL5	chrX	38001553	38133816
SYVN1_chr11_65122279_65139519	1/1	a0001	617	408	98	71	176	18	43	copy fasta	SYVN1	chr11	65122279	65139519
SYVN1_chr11_65122279_65139519	0/0	a0002	617	1	0	0	0	0	1	copy fasta	SYVN1	chr11	65122279	65139519
SYVN1_chr11_65122279_65139519	0/0	a0003	617	1	0	0	1	0	0	copy fasta	SYVN1	chr11	65122279	65139519
SYVN1_chr11_65122279_65139519	0/0	a0004	617	1	0	0	1	0	0	copy fasta	SYVN1	chr11	65122279	65139519
SYVN1_chr11_65122279_65139519	0/0	a0005	617	1	0	1	0	0	0	copy fasta	SYVN1	chr11	65122279	65139519
SZRD1_chr1_16362242_16403145	1/1	a0001	152	320	86	66	122	12	32	copy fasta	SZRD1	chr1	16362242	16403145
SZT2_chr1_43384899_43459247	1/1	a0001	3432	191	65	20	80	1	23	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	a0002	3432	51	5	24	16	4	2	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	a0003	3432	9	9	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	a0004	3432	7	7	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	a0005	3432	5	0	0	5	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	a0006	3432	5	0	5	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	a0007	3432	3	0	0	3	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	a0008	3432	2	2	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	a0009	3432	2	0	0	0	1	1	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	a0010	3432	2	0	0	0	2	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	a0011	3432	1	1	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	a0012	3432	1	0	1	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	a0013	3432	1	1	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	a0014	3432	1	1	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	a0015	2730	1	0	0	1	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	a0016	3432	1	1	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	a0017	3432	1	0	0	1	0	0	copy fasta	SZT2	chr1	43384899	43459247