JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SZT2_chr1_43384899_43459247	0/0	a0018	3432	1	0	0	0	0	1	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	a0019	3432	1	0	0	0	0	1	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	a0020	3432	1	0	0	1	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	a0021	3432	1	0	0	1	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	a0022	3432	1	0	0	1	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	a0023	3432	1	0	0	1	0	0	copy fasta	SZT2	chr1	43384899	43459247
TAAR1_chr6_132638312_132664182	1/1	a0001	339	428	88	82	206	14	36	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	a0002	339	4	0	0	4	0	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	a0003	339	2	2	0	0	0	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	a0004	339	1	1	0	0	0	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	a0005	339	1	1	0	0	0	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR2_chr6_132612150_132629275	1/0	a0001	351	413	81	85	187	18	41	copy fasta	TAAR2	chr6	132612150	132629275
TAAR2_chr6_132612150_132629275	0/1	a0002	167	27	1	0	24	0	1	copy fasta	TAAR2	chr6	132612150	132629275
TAAR2_chr6_132612150_132629275	0/0	a0003	351	7	7	0	0	0	0	copy fasta	TAAR2	chr6	132612150	132629275
TAAR2_chr6_132612150_132629275	0/0	a0004	246	3	3	0	0	0	0	copy fasta	TAAR2	chr6	132612150	132629275
TAAR2_chr6_132612150_132629275	0/0	a0005	351	1	0	0	1	0	0	copy fasta	TAAR2	chr6	132612150	132629275
TAAR2_chr6_132612150_132629275	0/0	a0006	351	1	0	1	0	0	0	copy fasta	TAAR2	chr6	132612150	132629275
TAAR5_chr6_132583592_132594741	1/1	a0001	337	412	74	80	200	16	40	copy fasta	TAAR5	chr6	132583592	132594741
TAAR5_chr6_132583592_132594741	0/0	a0002	337	17	17	0	0	0	0	copy fasta	TAAR5	chr6	132583592	132594741
TAAR5_chr6_132583592_132594741	0/0	a0003	337	11	0	0	11	0	0	copy fasta	TAAR5	chr6	132583592	132594741
TAAR5_chr6_132583592_132594741	0/0	a0004	337	1	0	1	0	0	0	copy fasta	TAAR5	chr6	132583592	132594741
TAAR5_chr6_132583592_132594741	0/0	a0005	337	1	1	0	0	0	0	copy fasta	TAAR5	chr6	132583592	132594741
TAAR5_chr6_132583592_132594741	0/0	a0006	337	1	0	1	0	0	0	copy fasta	TAAR5	chr6	132583592	132594741
TAAR5_chr6_132583592_132594741	0/0	a0007	337	1	0	0	1	0	0	copy fasta	TAAR5	chr6	132583592	132594741
TAAR6_chr6_132565322_132576359	1/1	a0001	345	391	48	74	209	17	41	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	a0002	345	16	15	1	0	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	a0003	345	14	0	5	9	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	a0004	345	14	2	0	9	0	3	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	a0005	345	9	3	5	0	1	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	a0006	345	9	9	0	0	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	a0007	345	3	3	0	0	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	a0008	345	3	3	0	0	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	a0009	345	2	2	0	0	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	a0010	345	2	2	0	0	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	a0011	345	1	0	0	1	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	a0012	345	1	0	1	0	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	a0013	345	1	1	0	0	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	a0014	345	1	0	0	1	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	a0015	345	1	1	0	0	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	a0016	318	1	0	0	1	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	a0017	345	1	1	0	0	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	a0018	345	1	1	0	0	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	a0019	345	1	1	0	0	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	a0020	345	1	1	0	0	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	a0021	345	1	1	0	0	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR8_chr6_132547672_132558756	1/1	a0001	342	406	87	83	181	13	40	copy fasta	TAAR8	chr6	132547672	132558756
TAAR8_chr6_132547672_132558756	0/0	a0002	342	14	1	1	7	3	2	copy fasta	TAAR8	chr6	132547672	132558756
TAAR8_chr6_132547672_132558756	0/0	a0003	342	5	0	0	5	0	0	copy fasta	TAAR8	chr6	132547672	132558756
TAAR8_chr6_132547672_132558756	0/0	a0004	342	3	3	0	0	0	0	copy fasta	TAAR8	chr6	132547672	132558756
TAAR8_chr6_132547672_132558756	0/0	a0005	342	3	3	0	0	0	0	copy fasta	TAAR8	chr6	132547672	132558756