JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BCAS4_chr20_50790061_50882177	0/0	a0005	173	1	0	0	1	0	0	copy fasta	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	a0006	173	1	0	0	1	0	0	copy fasta	BCAS4	chr20	50790061	50882177
BCAT1_chr12_24805024_24954101	1/1	a0001	386	316	86	66	117	12	33	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	a0002	386	2	0	0	2	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	a0003	207	1	0	0	1	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	a0004	386	1	0	0	1	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	a0005	386	1	0	0	0	0	1	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	a0006	386	1	0	0	1	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT2_chr19_48790064_48816029	1/1	a0001	392	387	95	69	172	12	37	copy fasta	BCAT2	chr19	48790064	48816029
BCAT2_chr19_48790064_48816029	0/0	a0002	392	16	0	9	0	4	3	copy fasta	BCAT2	chr19	48790064	48816029
BCAT2_chr19_48790064_48816029	0/0	a0003	392	2	0	2	0	0	0	copy fasta	BCAT2	chr19	48790064	48816029
BCAT2_chr19_48790064_48816029	0/0	a0004	392	1	1	0	0	0	0	copy fasta	BCAT2	chr19	48790064	48816029
BCAT2_chr19_48790064_48816029	0/0	a0005	392	1	0	1	0	0	0	copy fasta	BCAT2	chr19	48790064	48816029
BCAT2_chr19_48790064_48816029	0/0	a0006	392	1	0	1	0	0	0	copy fasta	BCAT2	chr19	48790064	48816029
BCCIP_chr10_125818546_125841551	1/1	a0001	314	441	90	75	212	14	48	copy fasta	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	a0002	314	4	0	0	4	0	0	copy fasta	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	a0003	314	1	0	1	0	0	0	copy fasta	BCCIP	chr10	125818546	125841551
BCDIN3D_chr12_49831043_49848106	1/1	a0001	292	268	78	45	91	16	36	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	a0002	292	142	12	23	100	0	7	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	a0003	292	5	5	0	0	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	a0004	292	1	1	0	0	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	a0005	292	1	0	1	0	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	a0006	292	1	0	0	0	0	1	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	a0007	292	1	0	1	0	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	a0008	292	1	0	0	1	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCHE_chr3_165767904_165842423	1/0	a0001	602	243	76	47	97	7	15	copy fasta	BCHE	chr3	165767904	165842423
BCHE_chr3_165767904_165842423	0/1	a0002	602	52	7	4	31	1	8	copy fasta	BCHE	chr3	165767904	165842423
BCHE_chr3_165767904_165842423	0/0	a0003	602	5	4	1	0	0	0	copy fasta	BCHE	chr3	165767904	165842423
BCHE_chr3_165767904_165842423	0/0	a0004	602	1	0	0	0	0	1	copy fasta	BCHE	chr3	165767904	165842423
BCHE_chr3_165767904_165842423	0/0	a0005	602	1	0	0	1	0	0	copy fasta	BCHE	chr3	165767904	165842423
BCHE_chr3_165767904_165842423	0/0	a0006	602	1	0	0	1	0	0	copy fasta	BCHE	chr3	165767904	165842423
BCHE_chr3_165767904_165842423	0/0	a0007	602	1	1	0	0	0	0	copy fasta	BCHE	chr3	165767904	165842423
BCKDHA_chr19_41392818_41430002	1/0	a0001	445	354	92	53	148	14	46	copy fasta	BCKDHA	chr19	41392818	41430002
BCKDHA_chr19_41392818_41430002	0/1	a0002	445	12	0	7	0	2	2	copy fasta	BCKDHA	chr19	41392818	41430002
BCKDHA_chr19_41392818_41430002	0/0	a0003	445	7	0	0	7	0	0	copy fasta	BCKDHA	chr19	41392818	41430002
BCKDHA_chr19_41392818_41430002	0/0	a0004	445	1	0	0	1	0	0	copy fasta	BCKDHA	chr19	41392818	41430002
BCKDHB_chr6_80101671_80351270	1/1	a0001	392	290	86	38	124	8	32	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	a0002	392	3	3	0	0	0	0	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	a0003	392	1	1	0	0	0	0	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDK_chr16_31103386_31117791	1/1	a0001	412	295	87	68	98	12	28	copy fasta	BCKDK	chr16	31103386	31117791
BCKDK_chr16_31103386_31117791	0/0	a0002	412	2	2	0	0	0	0	copy fasta	BCKDK	chr16	31103386	31117791
BCKDK_chr16_31103386_31117791	0/0	a0003	412	1	0	1	0	0	0	copy fasta	BCKDK	chr16	31103386	31117791
BCKDK_chr16_31103386_31117791	0/0	a0004	412	1	1	0	0	0	0	copy fasta	BCKDK	chr16	31103386	31117791
BCKDK_chr16_31103386_31117791	0/0	a0005	412	1	0	1	0	0	0	copy fasta	BCKDK	chr16	31103386	31117791
BCL10_chr1_85260776_85281632	1/1	a0001	233	375	98	71	156	15	33	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	a0002	233	53	0	2	43	1	7	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	a0003	233	18	0	5	11	0	2	copy fasta	BCL10	chr1	85260776	85281632
BCL11A_chr2_60452194_60558654	1/1	a0001	835	259	71	60	72	13	41	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	a0002	835	1	1	0	0	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	a0003	835	1	0	0	0	0	1	copy fasta	BCL11A	chr2	60452194	60558654