JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TACC2_chr10_121984163_122259542	0/0	a0063	2948	1	0	0	1	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0064	2948	1	1	0	0	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0065	2948	1	1	0	0	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0066	2948	1	1	0	0	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0067	2948	1	1	0	0	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0068	2948	1	0	1	0	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0069	2948	1	0	0	0	0	1	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0070	2948	1	1	0	0	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0071	1636	1	0	1	0	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0072	2948	1	0	0	1	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0073	2948	1	0	0	1	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0074	2948	1	0	1	0	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0075	2948	1	1	0	0	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0076	2948	1	1	0	0	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0077	2948	1	0	0	1	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0078	2948	1	0	0	0	0	1	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0079	2948	1	0	1	0	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0080	2948	1	0	1	0	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0081	2948	1	0	0	0	0	1	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0082	2948	1	1	0	0	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0083	2948	1	1	0	0	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0084	2948	1	0	0	0	0	1	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0085	2948	1	1	0	0	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0086	2948	1	1	0	0	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0087	2948	1	0	0	0	0	1	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0088	2948	1	0	0	0	0	1	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0089	2948	1	0	0	1	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0090	2948	1	0	0	0	0	1	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0091	2948	1	0	0	1	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0092	2948	1	0	1	0	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	a0093	2948	1	1	0	0	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC3_chr4_1716521_1750171	1/1	a0001	838	242	65	55	91	6	23	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	a0002	838	54	6	11	24	4	9	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	a0003	838	15	1	5	0	2	7	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	a0004	826	11	3	1	4	0	3	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	a0005	838	7	7	0	0	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	a0006	838	2	2	0	0	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	a0007	838	2	0	0	2	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	a0008	838	2	2	0	0	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	a0009	838	2	0	0	2	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	a0010	838	1	0	0	1	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	a0011	838	1	0	0	1	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	a0012	838	1	1	0	0	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	a0013	838	1	0	0	1	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	a0014	838	1	1	0	0	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	a0015	838	1	0	0	1	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	a0016	838	1	0	0	1	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACO1_chr17_63595895_63613365	1/1	a0001	297	292	85	53	104	16	32	copy fasta	TACO1	chr17	63595895	63613365
TACO1_chr17_63595895_63613365	0/0	a0002	297	9	8	1	0	0	0	copy fasta	TACO1	chr17	63595895	63613365
TACO1_chr17_63595895_63613365	0/0	a0003	297	1	1	0	0	0	0	copy fasta	TACO1	chr17	63595895	63613365