JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TAF10_chr11_6601294_6617216	0/0	a0002	218	4	0	4	0	0	0	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	a0003	218	2	0	0	0	0	2	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	a0004	218	1	0	1	0	0	0	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	a0005	218	1	0	1	0	0	0	copy fasta	TAF10	chr11	6601294	6617216
TAF11L10_chr5_17592232_17602828	0/0	a0001	198	190	60	52	40	14	24	copy fasta	TAF11L10	chr5	17592232	17602828
TAF11L10_chr5_17592232_17602828	0/0	a0002	44	149	16	20	93	4	16	copy fasta	TAF11L10	chr5	17592232	17602828
TAF11L10_chr5_17592232_17602828	0/0	a0003	198	4	4	0	0	0	0	copy fasta	TAF11L10	chr5	17592232	17602828
TAF11L10_chr5_17592232_17602828	0/0	a0004	198	2	2	0	0	0	0	copy fasta	TAF11L10	chr5	17592232	17602828
TAF11L10_chr5_17592232_17602828	0/0	a0005	198	1	0	0	1	0	0	copy fasta	TAF11L10	chr5	17592232	17602828
TAF11L10_chr5_17592232_17602828	0/0	a0006	198	1	1	0	0	0	0	copy fasta	TAF11L10	chr5	17592232	17602828
TAF11L10_chr5_17592232_17602828	0/0	a0007	198	1	1	0	0	0	0	copy fasta	TAF11L10	chr5	17592232	17602828
TAF11L10_chr5_17592232_17602828	0/0	a0008	198	1	1	0	0	0	0	copy fasta	TAF11L10	chr5	17592232	17602828
TAF11L10_chr5_17592232_17602828	0/0	a0009	198	1	1	0	0	0	0	copy fasta	TAF11L10	chr5	17592232	17602828
TAF11L10_chr5_17592232_17602828	0/0	a0010	198	1	0	0	1	0	0	copy fasta	TAF11L10	chr5	17592232	17602828
TAF11L10_chr5_17592232_17602828	0/0	a0011	44	1	0	0	1	0	0	copy fasta	TAF11L10	chr5	17592232	17602828
TAF11L13_chr5_17627088_17637684	0/1	a0001	198	354	69	67	159	16	42	copy fasta	TAF11L13	chr5	17627088	17637684
TAF11L13_chr5_17627088_17637684	1/0	a0002	198	30	15	5	6	0	3	copy fasta	TAF11L13	chr5	17627088	17637684
TAF11L13_chr5_17627088_17637684	0/0	a0003	198	6	6	0	0	0	0	copy fasta	TAF11L13	chr5	17627088	17637684
TAF11L13_chr5_17627088_17637684	0/0	a0004	198	5	5	0	0	0	0	copy fasta	TAF11L13	chr5	17627088	17637684
TAF11L13_chr5_17627088_17637684	0/0	a0005	198	4	0	1	2	0	1	copy fasta	TAF11L13	chr5	17627088	17637684
TAF11L13_chr5_17627088_17637684	0/0	a0006	198	4	2	2	0	0	0	copy fasta	TAF11L13	chr5	17627088	17637684
TAF11L13_chr5_17627088_17637684	0/0	a0007	198	1	0	0	0	0	1	copy fasta	TAF11L13	chr5	17627088	17637684
TAF11L13_chr5_17627088_17637684	0/0	a0008	198	1	0	1	0	0	0	copy fasta	TAF11L13	chr5	17627088	17637684
TAF11L13_chr5_17627088_17637684	0/0	a0009	198	1	0	0	0	0	1	copy fasta	TAF11L13	chr5	17627088	17637684
TAF11L13_chr5_17627088_17637684	0/0	a0010	198	1	0	0	1	0	0	copy fasta	TAF11L13	chr5	17627088	17637684
TAF11L13_chr5_17627088_17637684	0/0	a0011	198	1	1	0	0	0	0	copy fasta	TAF11L13	chr5	17627088	17637684
TAF11L14_chr5_17629460_17640053	1/1	a0001	197	372	75	75	154	16	50	copy fasta	TAF11L14	chr5	17629460	17640053
TAF11L14_chr5_17629460_17640053	0/0	a0002	197	14	12	2	0	0	0	copy fasta	TAF11L14	chr5	17629460	17640053
TAF11L14_chr5_17629460_17640053	0/0	a0003	197	7	7	0	0	0	0	copy fasta	TAF11L14	chr5	17629460	17640053
TAF11L14_chr5_17629460_17640053	0/0	a0004	197	4	3	1	0	0	0	copy fasta	TAF11L14	chr5	17629460	17640053
TAF11L14_chr5_17629460_17640053	0/0	a0005	42	1	1	0	0	0	0	copy fasta	TAF11L14	chr5	17629460	17640053
TAF11L2_chr5_17493231_17503827	1/0	a0001	198	381	73	71	176	16	44	copy fasta	TAF11L2	chr5	17493231	17503827
TAF11L2_chr5_17493231_17503827	0/0	a0002	198	8	4	2	2	0	0	copy fasta	TAF11L2	chr5	17493231	17503827
TAF11L2_chr5_17493231_17503827	0/0	a0003	198	4	0	0	4	0	0	copy fasta	TAF11L2	chr5	17493231	17503827
TAF11L2_chr5_17493231_17503827	0/0	a0004	198	1	0	1	0	0	0	copy fasta	TAF11L2	chr5	17493231	17503827
TAF11L2_chr5_17493231_17503827	0/0	a0005	198	1	0	0	1	0	0	copy fasta	TAF11L2	chr5	17493231	17503827
TAF11L2_chr5_17493231_17503827	0/0	a0006	198	1	0	0	1	0	0	copy fasta	TAF11L2	chr5	17493231	17503827
TAF11L2_chr5_17493231_17503827	0/0	a0007	198	1	0	0	1	0	0	copy fasta	TAF11L2	chr5	17493231	17503827
TAF11L2_chr5_17493231_17503827	0/0	a0008	198	1	1	0	0	0	0	copy fasta	TAF11L2	chr5	17493231	17503827
TAF11L2_chr5_17493231_17503827	0/0	a0009	198	1	0	0	1	0	0	copy fasta	TAF11L2	chr5	17493231	17503827
TAF11L3_chr5_17513367_17523963	0/0	a0001	198	391	66	81	185	16	43	copy fasta	TAF11L3	chr5	17513367	17523963
TAF11L3_chr5_17513367_17523963	0/0	a0002	198	15	10	1	2	0	2	copy fasta	TAF11L3	chr5	17513367	17523963
TAF11L3_chr5_17513367_17523963	0/0	a0003	198	1	1	0	0	0	0	copy fasta	TAF11L3	chr5	17513367	17523963
TAF11L3_chr5_17513367_17523963	0/0	a0004	198	1	1	0	0	0	0	copy fasta	TAF11L3	chr5	17513367	17523963
TAF11L3_chr5_17513367_17523963	0/0	a0005	198	1	0	0	0	0	1	copy fasta	TAF11L3	chr5	17513367	17523963
TAF11L3_chr5_17513367_17523963	0/0	a0006	198	1	0	0	1	0	0	copy fasta	TAF11L3	chr5	17513367	17523963
TAF11L4_chr5_17516801_17527397	0/0	a0001	198	335	59	67	153	14	42	copy fasta	TAF11L4	chr5	17516801	17527397
TAF11L4_chr5_17516801_17527397	0/0	a0002	198	5	4	1	0	0	0	copy fasta	TAF11L4	chr5	17516801	17527397
TAF11L4_chr5_17516801_17527397	0/0	a0003	198	4	1	0	1	0	2	copy fasta	TAF11L4	chr5	17516801	17527397
TAF11L4_chr5_17516801_17527397	0/0	a0004	198	3	0	0	3	0	0	copy fasta	TAF11L4	chr5	17516801	17527397