JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TAF11L4_chr5_17516801_17527397	0/0	a0005	198	1	0	0	1	0	0	copy fasta	TAF11L4	chr5	17516801	17527397
TAF11L4_chr5_17516801_17527397	0/0	a0006	198	1	1	0	0	0	0	copy fasta	TAF11L4	chr5	17516801	17527397
TAF11L4_chr5_17516801_17527397	0/0	a0007	198	1	1	0	0	0	0	copy fasta	TAF11L4	chr5	17516801	17527397
TAF11L4_chr5_17516801_17527397	0/0	a0008	198	1	0	0	1	0	0	copy fasta	TAF11L4	chr5	17516801	17527397
TAF11L4_chr5_17516801_17527397	0/0	a0009	198	1	0	0	1	0	0	copy fasta	TAF11L4	chr5	17516801	17527397
TAF11L8_chr5_17585364_17595960	0/0	a0001	198	94	15	15	58	0	6	copy fasta	TAF11L8	chr5	17585364	17595960
TAF11L8_chr5_17585364_17595960	0/0	a0002	198	3	0	1	2	0	0	copy fasta	TAF11L8	chr5	17585364	17595960
TAF11L8_chr5_17585364_17595960	0/0	a0003	198	1	0	0	1	0	0	copy fasta	TAF11L8	chr5	17585364	17595960
TAF11L8_chr5_17585364_17595960	0/0	a0004	198	1	1	0	0	0	0	copy fasta	TAF11L8	chr5	17585364	17595960
TAF11L8_chr5_17585364_17595960	0/0	a0005	198	1	1	0	0	0	0	copy fasta	TAF11L8	chr5	17585364	17595960
TAF11L8_chr5_17585364_17595960	0/0	a0006	198	1	1	0	0	0	0	copy fasta	TAF11L8	chr5	17585364	17595960
TAF11L8_chr5_17585364_17595960	0/0	a0007	198	1	0	0	1	0	0	copy fasta	TAF11L8	chr5	17585364	17595960
TAF11L9_chr5_17588798_17599394	0/0	a0001	198	107	16	17	64	0	10	copy fasta	TAF11L9	chr5	17588798	17599394
TAF11L9_chr5_17588798_17599394	0/0	a0002	198	2	0	1	1	0	0	copy fasta	TAF11L9	chr5	17588798	17599394
TAF11L9_chr5_17588798_17599394	0/0	a0003	198	2	2	0	0	0	0	copy fasta	TAF11L9	chr5	17588798	17599394
TAF11L9_chr5_17588798_17599394	0/0	a0004	198	1	0	0	1	0	0	copy fasta	TAF11L9	chr5	17588798	17599394
TAF11_chr6_34872462_34893042	1/1	a0001	211	420	90	74	202	14	38	copy fasta	TAF11	chr6	34872462	34893042
TAF11_chr6_34872462_34893042	0/0	a0002	211	5	0	0	5	0	0	copy fasta	TAF11	chr6	34872462	34893042
TAF11_chr6_34872462_34893042	0/0	a0003	211	3	0	2	1	0	0	copy fasta	TAF11	chr6	34872462	34893042
TAF12_chr1_28597850_28648067	1/1	a0001	161	302	82	66	96	16	40	copy fasta	TAF12	chr1	28597850	28648067
TAF13_chr1_109059140_109081003	1/1	a0001	124	414	98	74	180	14	46	copy fasta	TAF13	chr1	109059140	109081003
TAF15_chr17_35804484_35852242	0/1	a0001	592	313	74	67	133	10	28	copy fasta	TAF15	chr17	35804484	35852242
TAF15_chr17_35804484_35852242	0/0	a0002	599	2	0	0	2	0	0	copy fasta	TAF15	chr17	35804484	35852242
TAF15_chr17_35804484_35852242	0/0	a0003	601	2	0	0	2	0	0	copy fasta	TAF15	chr17	35804484	35852242
TAF15_chr17_35804484_35852242	0/0	a0004	592	1	1	0	0	0	0	copy fasta	TAF15	chr17	35804484	35852242
TAF15_chr17_35804484_35852242	0/0	a0005	592	1	0	0	1	0	0	copy fasta	TAF15	chr17	35804484	35852242
TAF15_chr17_35804484_35852242	0/0	a0006	592	1	1	0	0	0	0	copy fasta	TAF15	chr17	35804484	35852242
TAF15_chr17_35804484_35852242	0/0	a0007	584	1	0	1	0	0	0	copy fasta	TAF15	chr17	35804484	35852242
TAF1A_chr1_222553312_222594933	1/1	a0001	450	365	84	56	176	12	35	copy fasta	TAF1A	chr1	222553312	222594933
TAF1A_chr1_222553312_222594933	0/0	a0002	450	11	11	0	0	0	0	copy fasta	TAF1A	chr1	222553312	222594933
TAF1A_chr1_222553312_222594933	0/0	a0003	450	2	2	0	0	0	0	copy fasta	TAF1A	chr1	222553312	222594933
TAF1A_chr1_222553312_222594933	0/0	a0004	450	2	0	1	0	0	1	copy fasta	TAF1A	chr1	222553312	222594933
TAF1A_chr1_222553312_222594933	0/0	a0005	450	1	1	0	0	0	0	copy fasta	TAF1A	chr1	222553312	222594933
TAF1A_chr1_222553312_222594933	0/0	a0006	450	1	0	1	0	0	0	copy fasta	TAF1A	chr1	222553312	222594933
TAF1A_chr1_222553312_222594933	0/0	a0007	450	1	0	0	1	0	0	copy fasta	TAF1A	chr1	222553312	222594933
TAF1A_chr1_222553312_222594933	0/0	a0008	450	1	0	0	1	0	0	copy fasta	TAF1A	chr1	222553312	222594933
TAF1B_chr2_9838474_9939416	0/0	a0001	588	81	1	16	54	2	8	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/1	a0002	588	69	14	18	21	3	12	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	a0003	588	60	33	9	12	1	5	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	a0004	588	59	0	12	38	3	6	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	a0005	588	57	20	5	26	2	4	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	1/0	a0006	588	22	20	1	0	0	0	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	a0007	588	6	0	0	6	0	0	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	a0008	588	4	0	2	0	2	0	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	a0009	588	3	2	1	0	0	0	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	a0010	588	3	0	1	0	1	1	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	a0011	588	3	0	0	3	0	0	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	a0012	588	3	2	1	0	0	0	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	a0013	588	1	1	0	0	0	0	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	a0014	588	1	0	0	1	0	0	copy fasta	TAF1B	chr2	9838474	9939416