JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TAF1B_chr2_9838474_9939416	0/0	a0015	588	1	0	0	1	0	0	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	a0016	588	1	1	0	0	0	0	copy fasta	TAF1B	chr2	9838474	9939416
TAF1C_chr16_84172855_84192057	0/1	a0001	843	229	64	43	99	5	17	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	a0002	843	143	9	31	82	5	16	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	a0003	843	53	15	4	21	5	8	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	a0004	843	8	0	0	8	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	a0005	843	7	3	3	0	1	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	a0006	843	5	0	1	0	0	4	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	a0007	843	4	0	0	4	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	a0008	843	3	3	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	a0009	843	3	0	0	3	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	a0010	843	2	0	2	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	a0011	843	2	0	2	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	a0012	843	2	2	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	a0013	843	2	0	0	0	0	2	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	1/0	a0014	843	1	0	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	a0015	843	1	1	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	a0016	843	1	0	0	1	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	a0017	242	1	0	0	0	0	1	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	a0018	843	1	1	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	a0019	843	1	1	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	a0020	843	1	0	0	0	0	1	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	a0021	843	1	1	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	a0022	843	1	0	0	0	0	1	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	a0023	843	1	0	1	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	a0024	843	1	0	1	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1D_chr11_93730567_93746495	1/1	a0001	278	422	92	68	195	18	47	copy fasta	TAF1D	chr11	93730567	93746495
TAF1D_chr11_93730567_93746495	0/0	a0002	278	3	3	0	0	0	0	copy fasta	TAF1D	chr11	93730567	93746495
TAF1D_chr11_93730567_93746495	0/0	a0003	278	1	1	0	0	0	0	copy fasta	TAF1D	chr11	93730567	93746495
TAF1D_chr11_93730567_93746495	0/0	a0004	278	1	0	0	1	0	0	copy fasta	TAF1D	chr11	93730567	93746495
TAF1D_chr11_93730567_93746495	0/0	a0005	278	1	0	0	0	0	1	copy fasta	TAF1D	chr11	93730567	93746495
TAF1L_chr9_32624454_32640669	1/0	a0001	1826	323	70	57	159	10	26	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	a0002	1826	7	1	5	0	1	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	a0003	1826	5	5	0	0	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	a0004	1826	5	5	0	0	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	a0005	1826	4	4	0	0	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	a0006	1826	2	0	2	0	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	a0007	1826	1	0	0	1	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	a0008	1826	1	1	0	0	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	a0009	1826	1	1	0	0	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	a0010	1826	1	1	0	0	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/1	a0011	1826	1	0	0	0	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	a0012	1826	1	0	0	0	0	1	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	a0013	1826	1	0	0	1	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	a0014	1826	1	0	0	0	0	1	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	a0015	1826	1	0	1	0	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	a0016	1826	1	0	0	0	1	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	a0017	1826	1	0	1	0	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	a0018	1826	1	0	0	1	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1_chrX_71361357_71471005	1/1	a0001	1873	180	58	26	71	5	18	copy fasta	TAF1	chrX	71361357	71471005