JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TAF1_chrX_71361357_71471005	0/0	a0002	1873	13	0	11	0	0	2	copy fasta	TAF1	chrX	71361357	71471005
TAF1_chrX_71361357_71471005	0/0	a0003	1873	4	4	0	0	0	0	copy fasta	TAF1	chrX	71361357	71471005
TAF1_chrX_71361357_71471005	0/0	a0004	459	1	0	0	1	0	0	copy fasta	TAF1	chrX	71361357	71471005
TAF1_chrX_71361357_71471005	0/0	a0005	1775	1	0	0	1	0	0	copy fasta	TAF1	chrX	71361357	71471005
TAF1_chrX_71361357_71471005	0/0	a0006	1873	1	0	0	1	0	0	copy fasta	TAF1	chrX	71361357	71471005
TAF2_chr8_119725774_119837841	0/0	a0001	1199	154	35	31	63	9	16	copy fasta	TAF2	chr8	119725774	119837841
TAF2_chr8_119725774_119837841	1/0	a0002	1199	98	14	13	57	3	10	copy fasta	TAF2	chr8	119725774	119837841
TAF2_chr8_119725774_119837841	0/0	a0003	1199	27	18	1	1	0	7	copy fasta	TAF2	chr8	119725774	119837841
TAF2_chr8_119725774_119837841	0/0	a0004	1199	23	17	6	0	0	0	copy fasta	TAF2	chr8	119725774	119837841
TAF2_chr8_119725774_119837841	0/1	a0005	1199	17	6	3	2	2	3	copy fasta	TAF2	chr8	119725774	119837841
TAF2_chr8_119725774_119837841	0/0	a0006	1199	2	0	0	0	0	2	copy fasta	TAF2	chr8	119725774	119837841
TAF2_chr8_119725774_119837841	0/0	a0007	1199	1	0	0	1	0	0	copy fasta	TAF2	chr8	119725774	119837841
TAF3_chr10_7813505_8021631	0/0	a0001	929	194	23	42	102	8	19	copy fasta	TAF3	chr10	7813505	8021631
TAF3_chr10_7813505_8021631	1/0	a0002	929	88	27	16	32	3	9	copy fasta	TAF3	chr10	7813505	8021631
TAF3_chr10_7813505_8021631	0/1	a0003	929	39	23	1	2	3	9	copy fasta	TAF3	chr10	7813505	8021631
TAF3_chr10_7813505_8021631	0/0	a0004	929	5	0	4	0	0	1	copy fasta	TAF3	chr10	7813505	8021631
TAF3_chr10_7813505_8021631	0/0	a0005	929	4	4	0	0	0	0	copy fasta	TAF3	chr10	7813505	8021631
TAF3_chr10_7813505_8021631	0/0	a0006	929	4	0	1	2	0	1	copy fasta	TAF3	chr10	7813505	8021631
TAF3_chr10_7813505_8021631	0/0	a0007	929	3	3	0	0	0	0	copy fasta	TAF3	chr10	7813505	8021631
TAF3_chr10_7813505_8021631	0/0	a0008	929	2	0	1	0	0	1	copy fasta	TAF3	chr10	7813505	8021631
TAF3_chr10_7813505_8021631	0/0	a0009	929	2	0	0	2	0	0	copy fasta	TAF3	chr10	7813505	8021631
TAF3_chr10_7813505_8021631	0/0	a0010	929	1	0	0	1	0	0	copy fasta	TAF3	chr10	7813505	8021631
TAF3_chr10_7813505_8021631	0/0	a0011	929	1	0	1	0	0	0	copy fasta	TAF3	chr10	7813505	8021631
TAF3_chr10_7813505_8021631	0/0	a0012	929	1	0	0	1	0	0	copy fasta	TAF3	chr10	7813505	8021631
TAF4B_chr18_26221445_26396685	1/1	a0001	862	208	65	46	70	5	20	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	a0002	862	40	6	12	11	3	8	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	a0003	862	8	2	4	0	2	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	a0004	862	5	5	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	a0005	862	2	0	0	2	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	a0006	862	2	2	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	a0007	862	2	2	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	a0008	862	1	1	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	a0009	862	1	1	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	a0010	862	1	0	0	1	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	a0011	862	1	1	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	a0012	862	1	1	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	a0013	862	1	1	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	a0014	862	1	1	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4_chr20_61969798_62070881	0/1	a0001	1083	272	68	63	98	16	26	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	a0002	1080	9	0	0	8	0	1	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	a0003	458	9	2	2	2	0	3	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	a0004	1083	4	4	0	0	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	a0005	1083	3	0	1	1	0	1	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	a0006	1079	3	1	2	0	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	a0007	1083	2	0	0	2	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	a0008	1085	1	1	0	0	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	a0009	1077	1	0	0	1	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	a0010	1075	1	1	0	0	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	a0011	1081	1	0	0	0	0	1	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	a0012	1083	1	0	0	0	0	1	copy fasta	TAF4	chr20	61969798	62070881