JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TAF4_chr20_61969798_62070881	0/0	a0013	1083	1	1	0	0	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	a0014	1083	1	0	0	0	0	1	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	a0015	1083	1	0	0	0	0	1	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	a0016	458	1	0	0	1	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	a0017	458	1	0	0	0	0	1	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	a0018	1085	1	0	0	1	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	1/0	a0019	1085	1	0	0	0	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF5L_chr1_229588134_229631122	1/1	a0001	589	375	90	68	156	13	46	copy fasta	TAF5L	chr1	229588134	229631122
TAF5L_chr1_229588134_229631122	0/0	a0002	589	1	0	0	0	1	0	copy fasta	TAF5L	chr1	229588134	229631122
TAF5_chr10_103362976_103394065	1/1	a0001	800	252	78	42	100	10	20	copy fasta	TAF5	chr10	103362976	103394065
TAF5_chr10_103362976_103394065	0/0	a0002	800	143	15	30	87	4	7	copy fasta	TAF5	chr10	103362976	103394065
TAF5_chr10_103362976_103394065	0/0	a0003	800	1	0	0	1	0	0	copy fasta	TAF5	chr10	103362976	103394065
TAF5_chr10_103362976_103394065	0/0	a0004	800	1	0	0	0	0	1	copy fasta	TAF5	chr10	103362976	103394065
TAF5_chr10_103362976_103394065	0/0	a0005	800	1	0	0	1	0	0	copy fasta	TAF5	chr10	103362976	103394065
TAF5_chr10_103362976_103394065	0/0	a0006	800	1	1	0	0	0	0	copy fasta	TAF5	chr10	103362976	103394065
TAF5_chr10_103362976_103394065	0/0	a0007	800	1	0	0	1	0	0	copy fasta	TAF5	chr10	103362976	103394065
TAF6L_chr11_62766396_62792342	1/1	a0001	622	348	83	62	149	16	36	copy fasta	TAF6L	chr11	62766396	62792342
TAF6L_chr11_62766396_62792342	0/0	a0002	622	1	1	0	0	0	0	copy fasta	TAF6L	chr11	62766396	62792342
TAF6L_chr11_62766396_62792342	0/0	a0003	622	1	0	0	1	0	0	copy fasta	TAF6L	chr11	62766396	62792342
TAF6_chr7_100102070_100124358	1/1	a0001	677	399	92	66	175	16	48	copy fasta	TAF6	chr7	100102070	100124358
TAF6_chr7_100102070_100124358	0/0	a0002	677	6	0	0	6	0	0	copy fasta	TAF6	chr7	100102070	100124358
TAF6_chr7_100102070_100124358	0/0	a0003	161	1	0	0	1	0	0	copy fasta	TAF6	chr7	100102070	100124358
TAF6_chr7_100102070_100124358	0/0	a0004	313	1	0	0	1	0	0	copy fasta	TAF6	chr7	100102070	100124358
TAF6_chr7_100102070_100124358	0/0	a0005	677	1	0	0	1	0	0	copy fasta	TAF6	chr7	100102070	100124358
TAF7L_chrX_101263257_101296334	1/0	a0001	376	179	49	28	76	5	20	copy fasta	TAF7L	chrX	101263257	101296334
TAF7L_chrX_101263257_101296334	0/0	a0002	376	76	16	15	38	4	3	copy fasta	TAF7L	chrX	101263257	101296334
TAF7L_chrX_101263257_101296334	0/1	a0003	374	26	9	5	3	3	5	copy fasta	TAF7L	chrX	101263257	101296334
TAF7L_chrX_101263257_101296334	0/0	a0004	376	2	0	1	0	1	0	copy fasta	TAF7L	chrX	101263257	101296334
TAF7L_chrX_101263257_101296334	0/0	a0005	373	2	0	2	0	0	0	copy fasta	TAF7L	chrX	101263257	101296334
TAF7_chr5_141313490_141325784	1/1	a0001	349	420	98	84	184	16	36	copy fasta	TAF7	chr5	141313490	141325784
TAF8_chr6_42045524_42088272	1/1	a0001	310	454	96	80	214	18	44	copy fasta	TAF8	chr6	42045524	42088272
TAF9B_chrX_78124748_78144650	1/1	a0001	251	315	76	46	150	9	32	copy fasta	TAF9B	chrX	78124748	78144650
TAF9B_chrX_78124748_78144650	0/0	a0002	233	1	0	0	1	0	0	copy fasta	TAF9B	chrX	78124748	78144650
TAF9B_chrX_78124748_78144650	0/0	a0003	251	1	0	1	0	0	0	copy fasta	TAF9B	chrX	78124748	78144650
TAF9B_chrX_78124748_78144650	0/0	a0004	251	1	0	1	0	0	0	copy fasta	TAF9B	chrX	78124748	78144650
TAF9_chr5_69359743_69374520	0/1	a0001	264	434	95	78	204	14	42	copy fasta	TAF9	chr5	69359743	69374520
TAF9_chr5_69359743_69374520	0/0	a0002	264	4	0	2	0	0	2	copy fasta	TAF9	chr5	69359743	69374520
TAF9_chr5_69359743_69374520	0/0	a0003	264	1	0	0	1	0	0	copy fasta	TAF9	chr5	69359743	69374520
TAF9_chr5_69359743_69374520	0/0	a0004	264	1	1	0	0	0	0	copy fasta	TAF9	chr5	69359743	69374520
TAF9_chr5_69359743_69374520	0/0	a0005	264	1	0	0	1	0	0	copy fasta	TAF9	chr5	69359743	69374520
TAFA1_chr3_67999247_68550621	0/0	a0001	133	156	60	32	38	4	22	copy fasta	TAFA1	chr3	67999247	68550621
TAFA2_chr12_61703273_62197773	0/0	a0001	131	220	76	48	68	8	20	copy fasta	TAFA2	chr12	61703273	62197773
TAFA3_chr1_112713905_112732235	1/1	a0001	133	417	95	76	184	12	48	copy fasta	TAFA3	chr1	112713905	112732235
TAFA3_chr1_112713905_112732235	0/0	a0002	133	2	2	0	0	0	0	copy fasta	TAFA3	chr1	112713905	112732235
TAFA3_chr1_112713905_112732235	0/0	a0003	13	1	0	0	1	0	0	copy fasta	TAFA3	chr1	112713905	112732235
TAFA3_chr1_112713905_112732235	0/0	a0004	133	1	1	0	0	0	0	copy fasta	TAFA3	chr1	112713905	112732235
TAFA3_chr1_112713905_112732235	0/0	a0005	133	1	1	0	0	0	0	copy fasta	TAFA3	chr1	112713905	112732235
TAFA3_chr1_112713905_112732235	0/0	a0006	133	1	1	0	0	0	0	copy fasta	TAFA3	chr1	112713905	112732235
TAFA3_chr1_112713905_112732235	0/0	a0007	133	1	0	0	1	0	0	copy fasta	TAFA3	chr1	112713905	112732235
TAFA4_chr3_68726766_68937547	1/1	a0001	140	315	80	54	135	12	32	copy fasta	TAFA4	chr3	68726766	68937547