JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TAMM41_chr3_11785442_11851885	1/0	a0001	337	282	71	54	119	11	26	copy fasta	TAMM41	chr3	11785442	11851885
TAMM41_chr3_11785442_11851885	0/0	a0002	337	73	14	11	33	3	12	copy fasta	TAMM41	chr3	11785442	11851885
TAMM41_chr3_11785442_11851885	0/1	a0003	337	10	0	3	2	3	1	copy fasta	TAMM41	chr3	11785442	11851885
TAMM41_chr3_11785442_11851885	0/0	a0004	337	3	0	1	0	1	1	copy fasta	TAMM41	chr3	11785442	11851885
TAMM41_chr3_11785442_11851885	0/0	a0005	337	2	2	0	0	0	0	copy fasta	TAMM41	chr3	11785442	11851885
TAMM41_chr3_11785442_11851885	0/0	a0006	337	1	0	1	0	0	0	copy fasta	TAMM41	chr3	11785442	11851885
TAMM41_chr3_11785442_11851885	0/0	a0007	337	1	1	0	0	0	0	copy fasta	TAMM41	chr3	11785442	11851885
TANC1_chr2_158963640_159237659	0/0	a0001	1861	87	26	15	26	3	17	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	a0002	1861	74	9	20	33	5	7	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	a0003	1861	46	10	2	28	2	4	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	a0004	1861	14	0	8	0	4	2	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	1/0	a0005	1861	6	4	0	0	0	1	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	a0006	1861	6	6	0	0	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/1	a0007	1861	6	0	5	0	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	a0008	1861	4	4	0	0	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	a0009	1861	3	3	0	0	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	a0010	1861	1	1	0	0	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	a0011	1861	1	1	0	0	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	a0012	1861	1	0	0	0	0	1	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	a0013	1861	1	0	1	0	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	a0014	1861	1	0	0	1	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	a0015	1861	1	1	0	0	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	a0016	1861	1	0	0	1	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	a0017	1861	1	1	0	0	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	a0018	1861	1	1	0	0	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	a0019	1861	1	0	0	1	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	a0020	1861	1	1	0	0	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	a0021	1861	1	0	1	0	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC2_chr17_62961235_63432703	1/1	a0001	2074	250	68	60	76	8	36	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	a0002	2074	5	1	2	0	2	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	a0003	2074	2	2	0	0	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	a0004	2074	2	0	0	2	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	a0005	2074	2	0	0	2	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	a0006	2074	1	0	0	1	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	a0007	2074	1	1	0	0	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	a0008	2074	1	1	0	0	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	a0009	2074	1	0	0	1	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	a0010	2074	1	1	0	0	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANGO2_chr22_20016110_20072164	1/1	a0001	276	375	86	65	158	18	46	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	a0002	276	11	11	0	0	0	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	a0003	276	5	3	2	0	0	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	a0004	276	1	0	1	0	0	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO6_chr16_68838531_69090182	1/1	a0001	1094	194	60	44	62	8	18	copy fasta	TANGO6	chr16	68838531	69090182
TANGO6_chr16_68838531_69090182	0/0	a0002	1094	5	3	0	0	0	2	copy fasta	TANGO6	chr16	68838531	69090182
TANGO6_chr16_68838531_69090182	0/0	a0003	1094	5	5	0	0	0	0	copy fasta	TANGO6	chr16	68838531	69090182
TANGO6_chr16_68838531_69090182	0/0	a0004	1094	4	4	0	0	0	0	copy fasta	TANGO6	chr16	68838531	69090182
TANGO6_chr16_68838531_69090182	0/0	a0005	1094	1	1	0	0	0	0	copy fasta	TANGO6	chr16	68838531	69090182
TANGO6_chr16_68838531_69090182	0/0	a0006	1094	1	1	0	0	0	0	copy fasta	TANGO6	chr16	68838531	69090182
TANK_chr2_161155428_161241230	1/1	a0001	425	278	59	43	122	13	39	copy fasta	TANK	chr2	161155428	161241230
TANK_chr2_161155428_161241230	0/0	a0002	425	17	13	4	0	0	0	copy fasta	TANK	chr2	161155428	161241230