JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BCL11A_chr2_60452194_60558654	0/0	a0004	835	1	0	0	0	1	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11B_chr14_99164287_99277197	1/1	a0001	894	347	94	70	124	12	45	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	a0002	894	1	0	0	1	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	a0003	894	1	0	0	0	0	1	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	a0004	894	1	0	0	1	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL2A1_chr15_79955892_79976196	1/0	a0001	175	211	32	53	80	8	37	copy fasta	BCL2A1	chr15	79955892	79976196
BCL2A1_chr15_79955892_79976196	0/1	a0002	175	95	5	15	55	10	9	copy fasta	BCL2A1	chr15	79955892	79976196
BCL2A1_chr15_79955892_79976196	0/0	a0003	175	73	5	3	63	0	2	copy fasta	BCL2A1	chr15	79955892	79976196
BCL2A1_chr15_79955892_79976196	0/0	a0004	175	46	41	5	0	0	0	copy fasta	BCL2A1	chr15	79955892	79976196
BCL2A1_chr15_79955892_79976196	0/0	a0005	175	11	9	2	0	0	0	copy fasta	BCL2A1	chr15	79955892	79976196
BCL2L10_chr15_52104263_52117775	1/1	a0001	204	229	10	44	133	11	29	copy fasta	BCL2L10	chr15	52104263	52117775
BCL2L10_chr15_52104263_52117775	0/0	a0002	204	226	78	42	85	4	17	copy fasta	BCL2L10	chr15	52104263	52117775
BCL2L10_chr15_52104263_52117775	0/0	a0003	204	1	0	0	0	1	0	copy fasta	BCL2L10	chr15	52104263	52117775
BCL2L10_chr15_52104263_52117775	0/0	a0004	204	1	1	0	0	0	0	copy fasta	BCL2L10	chr15	52104263	52117775
BCL2L10_chr15_52104263_52117775	0/0	a0005	204	1	1	0	0	0	0	copy fasta	BCL2L10	chr15	52104263	52117775
BCL2L11_chr2_111115914_111173444	1/1	a0001	198	398	86	64	198	16	32	copy fasta	BCL2L11	chr2	111115914	111173444
BCL2L12_chr19_49660933_49678916	1/1	a0001	250	375	85	75	155	12	46	copy fasta	BCL2L12	chr19	49660933	49678916
BCL2L12_chr19_49660933_49678916	0/0	a0002	250	4	3	1	0	0	0	copy fasta	BCL2L12	chr19	49660933	49678916
BCL2L12_chr19_49660933_49678916	0/0	a0003	250	1	0	0	1	0	0	copy fasta	BCL2L12	chr19	49660933	49678916
BCL2L13_chr22_17633757_17735855	1/1	a0001	485	264	80	44	92	13	33	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	a0002	485	19	4	11	0	3	1	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	a0003	485	13	2	8	1	0	2	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	a0004	485	4	4	0	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	a0005	485	3	3	0	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	a0006	485	1	0	1	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	a0007	485	1	1	0	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	a0008	485	1	0	0	1	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L14_chr12_12065939_12104695	1/1	a0001	327	410	72	72	199	17	48	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	a0002	327	23	8	5	10	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	a0003	327	7	7	0	0	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	a0004	327	4	2	2	0	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	a0005	327	3	0	2	0	1	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	a0006	327	2	2	0	0	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	a0007	327	1	0	1	0	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	a0008	327	1	1	0	0	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	a0009	327	1	0	0	1	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	a0010	327	1	1	0	0	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	a0011	327	1	1	0	0	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L15_chr1_113871816_113892581	0/1	a0001	163	457	90	84	222	16	44	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	1/0	a0002	163	1	0	0	0	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L1_chr20_31659458_31727868	1/1	a0001	233	186	82	54	12	16	20	copy fasta	BCL2L1	chr20	31659458	31727868
BCL2L2_chr14_23301833_23316751	0/1	a0001	193	432	98	80	194	17	42	copy fasta	BCL2L2	chr14	23301833	23316751
BCL2L2_chr14_23301833_23316751	1/0	a0002	193	2	0	0	0	1	0	copy fasta	BCL2L2	chr14	23301833	23316751
BCL2_chr18_63118346_63324769	1/1	a0001	239	254	78	60	83	8	23	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	a0002	239	9	0	0	8	0	1	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	a0003	239	1	0	0	1	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL3_chr19_44743708_44765044	1/1	a0001	454	337	90	76	113	16	40	copy fasta	BCL3	chr19	44743708	44765044
BCL3_chr19_44743708_44765044	0/0	a0002	454	3	2	0	1	0	0	copy fasta	BCL3	chr19	44743708	44765044
BCL3_chr19_44743708_44765044	0/0	a0003	454	2	2	0	0	0	0	copy fasta	BCL3	chr19	44743708	44765044
BCL3_chr19_44743708_44765044	0/0	a0004	454	1	0	0	1	0	0	copy fasta	BCL3	chr19	44743708	44765044