JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TAP2_chr6_32820415_32843739	0/0	a0011	686	1	0	0	0	0	1	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	a0012	686	1	1	0	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAPBPL_chr12_6447042_6467316	1/0	a0001	468	133	35	32	46	3	16	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBPL_chr12_6447042_6467316	0/1	a0002	468	120	12	16	74	9	8	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBPL_chr12_6447042_6467316	0/0	a0003	468	109	34	13	50	3	9	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBPL_chr12_6447042_6467316	0/0	a0004	468	56	3	7	38	0	8	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBPL_chr12_6447042_6467316	0/0	a0005	468	16	0	8	2	3	3	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBPL_chr12_6447042_6467316	0/0	a0006	468	13	10	0	2	0	1	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBPL_chr12_6447042_6467316	0/0	a0007	468	3	0	2	1	0	0	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBPL_chr12_6447042_6467316	0/0	a0008	468	2	0	2	0	0	0	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBPL_chr12_6447042_6467316	0/0	a0009	468	2	0	0	2	0	0	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBPL_chr12_6447042_6467316	0/0	a0010	468	2	0	0	0	0	2	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBPL_chr12_6447042_6467316	0/0	a0011	468	1	1	0	0	0	0	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBPL_chr12_6447042_6467316	0/0	a0012	468	1	1	0	0	0	0	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBPL_chr12_6447042_6467316	0/0	a0013	468	1	0	0	1	0	0	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBPL_chr12_6447042_6467316	0/0	a0014	468	1	0	0	0	0	1	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBP_chr6_33294694_33319078	0/0	a0000	0	2	2	0	0	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	a0001	448	215	65	40	75	7	28	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/1	a0002	448	161	29	32	83	6	10	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	a0003	448	2	0	0	2	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	a0004	448	1	1	0	0	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	a0005	448	1	1	0	0	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	a0006	448	1	1	0	0	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	a0007	448	1	0	0	0	1	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	a0008	448	1	1	0	0	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPT1_chr4_16155505_16231471	1/1	a0001	567	368	81	59	170	9	47	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	a0002	567	5	5	0	0	0	0	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	a0003	567	4	4	0	0	0	0	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	a0004	567	3	2	1	0	0	0	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	a0005	567	1	0	0	0	1	0	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	a0006	567	1	0	0	0	0	1	copy fasta	TAPT1	chr4	16155505	16231471
TARBP1_chr1_234386313_234484179	1/1	a0001	1621	86	29	21	16	7	11	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0002	1621	42	12	17	3	2	8	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0003	1621	20	3	2	10	0	5	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0004	1621	17	0	0	15	0	2	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0005	1621	15	1	2	9	0	3	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0006	1621	14	8	3	3	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0007	1621	12	1	3	7	0	1	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0008	1621	8	0	1	7	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0009	1621	7	4	1	2	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0010	1621	7	0	0	7	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0011	1621	7	0	6	1	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0012	1621	4	3	1	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0013	1621	4	3	1	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0014	1621	4	0	0	4	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0015	1621	3	0	0	3	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0016	1621	2	2	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0017	1621	1	0	0	1	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0018	1621	1	1	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0019	1621	1	0	0	0	0	1	copy fasta	TARBP1	chr1	234386313	234484179