JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TARBP1_chr1_234386313_234484179	0/0	a0020	1621	1	0	0	1	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0021	1621	1	0	0	1	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0022	1621	1	0	0	0	0	1	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0023	1621	1	0	0	1	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0024	1621	1	1	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0025	1621	1	0	0	0	0	1	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0026	1621	1	0	1	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0027	1621	1	0	1	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0028	1621	1	1	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0029	1621	1	1	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0030	1621	1	0	0	1	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0031	1621	1	0	0	0	1	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0032	1621	1	0	0	0	0	1	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0033	1621	1	0	0	1	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0034	1621	1	0	0	1	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0035	1621	1	0	1	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0036	1621	1	0	1	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0037	1621	1	1	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	a0038	1621	1	1	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP2_chr12_53496283_53511431	1/1	a0001	366	333	90	66	115	14	46	copy fasta	TARBP2	chr12	53496283	53511431
TARBP2_chr12_53496283_53511431	0/0	a0002	366	1	0	0	1	0	0	copy fasta	TARBP2	chr12	53496283	53511431
TARDBP_chr1_11007654_11030492	1/1	a0001	414	359	94	62	153	10	38	copy fasta	TARDBP	chr1	11007654	11030492
TARDBP_chr1_11007654_11030492	0/0	a0002	414	1	0	0	1	0	0	copy fasta	TARDBP	chr1	11007654	11030492
TARM1_chr19_54064895_54086365	0/1	a0001	271	369	95	65	157	12	39	copy fasta	TARM1	chr19	54064895	54086365
TARM1_chr19_54064895_54086365	0/0	a0002	271	20	0	9	8	2	1	copy fasta	TARM1	chr19	54064895	54086365
TARM1_chr19_54064895_54086365	0/0	a0003	271	10	0	2	7	0	1	copy fasta	TARM1	chr19	54064895	54086365
TARM1_chr19_54064895_54086365	0/0	a0004	271	2	0	0	0	0	2	copy fasta	TARM1	chr19	54064895	54086365
TARM1_chr19_54064895_54086365	0/0	a0005	271	2	0	0	2	0	0	copy fasta	TARM1	chr19	54064895	54086365
TARM1_chr19_54064895_54086365	0/0	a0006	271	1	1	0	0	0	0	copy fasta	TARM1	chr19	54064895	54086365
TARM1_chr19_54064895_54086365	0/0	a0007	271	1	0	0	1	0	0	copy fasta	TARM1	chr19	54064895	54086365
TARM1_chr19_54064895_54086365	0/0	a0008	271	1	0	0	1	0	0	copy fasta	TARM1	chr19	54064895	54086365
TARM1_chr19_54064895_54086365	0/0	a0009	271	1	0	0	0	0	1	copy fasta	TARM1	chr19	54064895	54086365
TARM1_chr19_54064895_54086365	0/0	a0010	271	1	0	0	0	0	1	copy fasta	TARM1	chr19	54064895	54086365
TARM1_chr19_54064895_54086365	0/0	a0011	271	1	0	0	0	0	1	copy fasta	TARM1	chr19	54064895	54086365
TARP_chr7_38254643_38278636	1/0	a0001	58	444	89	76	216	16	46	copy fasta	TARP	chr7	38254643	38278636
TARP_chr7_38254643_38278636	0/0	a0002	58	5	5	0	0	0	0	copy fasta	TARP	chr7	38254643	38278636
TARP_chr7_38254643_38278636	0/0	a0003	58	5	4	1	0	0	0	copy fasta	TARP	chr7	38254643	38278636
TARP_chr7_38254643_38278636	0/0	a0004	58	2	0	0	0	0	2	copy fasta	TARP	chr7	38254643	38278636
TARP_chr7_38254643_38278636	0/0	a0005	58	1	0	1	0	0	0	copy fasta	TARP	chr7	38254643	38278636
TARS1_chr5_33435965_33473086	1/1	a0001	723	390	80	58	191	12	47	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	a0002	723	7	7	0	0	0	0	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	a0003	723	3	1	2	0	0	0	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	a0004	711	2	2	0	0	0	0	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	a0005	723	1	1	0	0	0	0	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	a0006	723	1	0	0	1	0	0	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	a0007	723	1	0	1	0	0	0	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	a0008	723	1	0	0	0	0	1	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	a0009	728	1	0	1	0	0	0	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	a0010	723	1	0	1	0	0	0	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	a0011	723	1	1	0	0	0	0	copy fasta	TARS1	chr5	33435965	33473086