JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TARS1_chr5_33435965_33473086	0/0	a0012	723	1	1	0	0	0	0	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	a0013	723	1	0	1	0	0	0	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	a0014	723	1	1	0	0	0	0	copy fasta	TARS1	chr5	33435965	33473086
TARS2_chr1_150482419_150512602	1/1	a0001	718	398	90	68	180	14	44	copy fasta	TARS2	chr1	150482419	150512602
TARS2_chr1_150482419_150512602	0/0	a0002	718	1	0	0	1	0	0	copy fasta	TARS2	chr1	150482419	150512602
TARS2_chr1_150482419_150512602	0/0	a0003	718	1	0	0	1	0	0	copy fasta	TARS2	chr1	150482419	150512602
TARS3_chr15_101648596_101729473	1/0	a0001	802	111	40	26	31	2	11	copy fasta	TARS3	chr15	101648596	101729473
TARS3_chr15_101648596_101729473	0/1	a0002	802	108	13	18	54	5	17	copy fasta	TARS3	chr15	101648596	101729473
TARS3_chr15_101648596_101729473	0/0	a0003	802	54	25	18	0	5	6	copy fasta	TARS3	chr15	101648596	101729473
TARS3_chr15_101648596_101729473	0/0	a0004	802	1	0	0	1	0	0	copy fasta	TARS3	chr15	101648596	101729473
TARS3_chr15_101648596_101729473	0/0	a0005	802	1	1	0	0	0	0	copy fasta	TARS3	chr15	101648596	101729473
TARS3_chr15_101648596_101729473	0/0	a0006	802	1	1	0	0	0	0	copy fasta	TARS3	chr15	101648596	101729473
TARS3_chr15_101648596_101729473	0/0	a0007	802	1	1	0	0	0	0	copy fasta	TARS3	chr15	101648596	101729473
TARS3_chr15_101648596_101729473	0/0	a0008	802	1	1	0	0	0	0	copy fasta	TARS3	chr15	101648596	101729473
TAS1R1_chr1_6550307_6584755	0/1	a0001	841	246	43	57	93	12	40	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	a0002	841	67	4	7	53	0	3	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	1/0	a0003	841	28	26	1	0	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	a0004	841	13	0	0	13	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	a0005	841	9	9	0	0	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	a0006	841	4	0	3	1	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	a0007	841	4	4	0	0	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	a0008	841	3	0	0	3	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	a0009	841	3	2	0	0	0	1	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	a0010	841	2	0	1	0	0	1	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	a0011	841	2	0	2	0	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	a0012	841	2	2	0	0	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	a0013	841	2	2	0	0	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	a0014	841	2	0	2	0	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	a0015	841	2	1	0	0	0	1	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	a0016	841	1	0	0	1	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	a0017	841	1	0	0	1	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	a0018	841	1	1	0	0	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	a0019	841	1	0	1	0	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	a0020	841	1	0	0	0	1	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	a0021	841	1	0	0	1	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	a0022	841	1	1	0	0	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	a0023	841	1	1	0	0	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	a0024	841	1	0	0	0	1	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	a0025	841	1	0	0	1	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	a0026	841	1	0	0	1	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R2_chr1_18834599_18864660	0/0	a0001	839	213	29	35	112	8	29	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	1/0	a0002	839	45	5	2	33	0	4	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	a0003	839	28	6	10	1	7	4	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	a0004	839	21	0	2	16	0	3	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	a0005	839	21	1	7	9	0	4	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/1	a0006	839	18	11	6	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	a0007	839	11	10	1	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	a0008	839	11	0	0	11	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	a0009	839	5	5	0	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	a0010	839	4	2	0	0	2	0	copy fasta	TAS1R2	chr1	18834599	18864660