JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TAS1R2_chr1_18834599_18864660	0/0	a0011	839	3	3	0	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	a0012	839	3	2	0	0	0	1	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	a0013	839	3	1	2	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	a0014	839	3	2	1	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	a0015	839	3	0	0	3	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	a0016	839	3	0	2	0	1	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	a0017	839	3	0	0	2	0	1	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	a0018	839	3	1	2	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	a0019	839	3	3	0	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	a0020	839	2	0	2	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	a0021	839	2	0	2	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	a0022	839	2	2	0	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	a0023	839	2	2	0	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	a0024	839	2	2	0	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	a0025	839	2	2	0	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	a0026	839	1	1	0	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	a0027	839	1	1	0	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	a0028	839	1	0	1	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	a0029	839	1	0	0	1	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	a0030	839	1	1	0	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	a0031	839	1	0	1	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	a0032	839	1	1	0	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	a0033	839	1	0	1	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	a0034	839	1	1	0	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	a0035	839	1	0	0	0	0	1	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	a0036	839	1	0	1	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	a0037	839	1	0	0	0	0	1	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R3_chr1_1326280_1340314	0/0	a0001	852	299	59	64	124	16	36	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	1/0	a0002	852	41	5	2	29	0	4	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	a0003	852	22	21	1	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	a0004	852	3	0	2	0	0	1	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	a0005	852	3	3	0	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	a0006	852	2	0	2	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/1	a0007	852	2	1	0	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	a0008	852	1	0	0	1	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	a0009	852	1	0	0	0	0	1	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	a0010	852	1	1	0	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	a0011	852	1	1	0	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	a0012	852	1	1	0	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	a0013	852	1	0	0	1	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	a0014	852	1	0	0	0	0	1	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	a0015	852	1	0	0	1	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	a0016	859	1	1	0	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	a0017	852	1	0	0	1	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	a0018	852	1	0	0	0	0	1	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	a0019	852	1	0	1	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	a0020	852	1	0	0	1	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	a0021	852	1	1	0	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS2R10_chr12_10820219_10831358	0/1	a0001	307	388	71	79	175	18	44	copy fasta	TAS2R10	chr12	10820219	10831358
TAS2R10_chr12_10820219_10831358	0/0	a0002	307	18	16	0	0	0	2	copy fasta	TAS2R10	chr12	10820219	10831358